| Previous changeset 3:b74f2b97a501 (2015-05-16) Next changeset 5:750194c6e76e (2015-05-16) |
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Commit message:
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added:
tool_dependencies.xml |
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| diff -r b74f2b97a501 -r 49c1ed90d6d6 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat May 16 05:06:35 2015 -0400 |
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| @@ -0,0 +1,30 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.0.3"> + <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="xcms" version="1.44.0"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="R" version="3.0.3" /> + </repository> + <package>http://cran.ms.unimelb.edu.au/src/contrib/Rcpp_0.11.6.tar.gz?raw=true</package> + <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/BiocGenerics_0.14.0.tar.gz?raw=true</package> + <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/Biobase_2.28.0.tar.gz?raw=true</package> + <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/ProtGenerics_1.0.0.tar.gz?raw=true</package> + <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/mzR_2.2.1.tar.gz?raw=true</package> + <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/xcms_1.44.0.tar.gz?raw=true</package> + </action> + </actions> + </install> + <readme> + xcms is a package from Bioconductor containing all needed steps for GC-LCMS analysis begening with the preprocessing and ending with + the exploratory analysis. + integrated to the main galaxy toolshed by bensellak.taoufik@gmail.com for studies purpose and trainee ship on mass spectrometry + analysis workflows and pipelines answering for some biological questions such as biomarquers identification extraction and + slection. targeted and untargeted (label free) quantification. + </readme> + </package> +</tool_dependency> |