Repository 'squidpy'
hg clone https://toolshed.g2.bx.psu.edu/repos/goeckslab/squidpy

Changeset 2:4a058bd23a12 (2024-04-29)
Previous changeset 1:bad34051dc8a (2024-02-28) Next changeset 3:d30ef0613122 (2024-05-14)
Commit message:
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit ae0f7f9e0f265031ce1a9c1cadea109b0e1b81aa
modified:
main_macros.xml
squidpy_spatial.xml
b
diff -r bad34051dc8a -r 4a058bd23a12 main_macros.xml
--- a/main_macros.xml Wed Feb 28 20:52:29 2024 +0000
+++ b/main_macros.xml Mon Apr 29 20:42:57 2024 +0000
b
@@ -1,7 +1,7 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.1.2</token>
+    <token name="@TOOL_VERSION@">1.4.1</token>
     <token name="@PROFILE@">20.01</token>
-    <token name="@VERSION_SUFFIX@">2</token> 
+    <token name="@VERSION_SUFFIX@">0</token> 
 
     <xml name="macro_stdio">
         <stdio>
b
diff -r bad34051dc8a -r 4a058bd23a12 squidpy_spatial.xml
--- a/squidpy_spatial.xml Wed Feb 28 20:52:29 2024 +0000
+++ b/squidpy_spatial.xml Mon Apr 29 20:42:57 2024 +0000
[
@@ -82,7 +82,7 @@
                 <param argument="cluster_key" type="text" value="" optional="false" label="Key in anndata.AnnData.obs where clustering is stored" />
                 <expand macro="squidpy_spatial_options">
                     <param argument="spatial_key" type="text" value="spatial" optional="false" label="The Key where spatial coordinates are stored" help="Key in `anndata.AnnData.obsm`." />
-                    <param argument="n_steps" type="integer" value="50" label="Number of distance thresholds at which co-occurrence is computed" />
+                    <param argument="interval" type="integer" value="50" label="Number of distance thresholds at which co-occurrence is computed" />
                     <param argument="n_splits" type="integer" value="" optional="true" label="Number of splits in which to divide the spatial coordinates" help="In anndata.AnnData.obsm ['{spatial_key}']." />
                 </expand>
                 <expand macro="squidpy_plotting_options">