| Previous changeset 0:61e41d21cb6f (2013-08-26) Next changeset 2:99a28567c3a3 (2014-11-11) |
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modified:
tool_dependencies.xml |
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| diff -r 61e41d21cb6f -r 4a49481f29e7 tool_dependencies.xml --- a/tool_dependencies.xml Mon Aug 26 14:19:27 2013 -0400 +++ b/tool_dependencies.xml Thu Oct 23 10:51:08 2014 -0400 |
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| @@ -1,19 +1,22 @@ <?xml version="1.0"?> <tool_dependency> - <package name="picard" version="1.56.0"> + <package name="picard" version="1.122.0"> <install version="1.0"> - <actions> - <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action> - <action type="move_directory_files"> - <source_directory>picard-tools-1.56</source_directory> - <destination_directory>$INSTALL_DIR/jars</destination_directory> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <action type="set_environment"> + <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> </action> - <action type="set_environment"> - <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable> - </action> - </actions> + </actions_group> </install> <readme> +This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases </readme> </package> </tool_dependency> |