| Previous changeset 4:24c09eccd392 (2018-02-28) Next changeset 6:672d420da71f (2018-05-14) |
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Commit message:
Uploaded |
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modified:
zippable Kinamine-JJ/Kinamine.xml zippable Kinamine-JJ/test-data/output_Substrates.csv |
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added:
zippable Kinamine-JJ/test-data/output_Substrates123.csv zippable Kinamine-JJ/test-data/outputtime.csv zippable Kinamine-JJ/test-data/outputtime2.csv |
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| diff -r 24c09eccd392 -r 4b07046ee6d7 zippable Kinamine-JJ/Kinamine.xml --- a/zippable Kinamine-JJ/Kinamine.xml Wed Feb 28 14:14:11 2018 -0500 +++ b/zippable Kinamine-JJ/Kinamine.xml Fri May 04 12:20:27 2018 -0400 |
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| @@ -12,7 +12,7 @@ <inputs> <param format="tabular" name="FDRreport" type="data" label="Distinct Peptide Report"/> <param format="fasta" name="reference" type="data" label="Protein FASTA reference"/> - <param name="fdr" type="integer" value="1" min="1" max="100" label="FDR"/> + <param name="fdr" type="float" value="1" min="1" max="100" label="FDR"/> <param name="outGroup" type="text" value="kinase" label="Kinase Name"/> </inputs> <outputs> |
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| diff -r 24c09eccd392 -r 4b07046ee6d7 zippable Kinamine-JJ/test-data/output_Substrates.csv --- a/zippable Kinamine-JJ/test-data/output_Substrates.csv Wed Feb 28 14:14:11 2018 -0500 +++ b/zippable Kinamine-JJ/test-data/output_Substrates.csv Fri May 04 12:20:27 2018 -0400 |
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| b'@@ -1,1254 +1,1254 @@\n-Substrates,Species,Reference,-7,-6,-5,-4,-3,-2,-1,0,1,2,3,4,5,6,7, , , ,Phosphite\n-,,sp|P08238|HS90B_HUMAN; sp|P07900|HS90A_HUMAN; sp|P07900-2|HS90A_HUMAN,,,,D,Q,T,E,Y,L,E,E,R,,,,,,,DQTEYLEER,LKEDQTEYLEERRVK,LKEDQTEYLEERRIK,\n-,,tr|H0YKK0|H0YKK0_HUMAN; sp|P09661|RU2A_HUMAN,,,,,S,L,T,Y,L,S,I,L,R,,,,,,SLTYLSILR,ASLKSLTYLSILRNP,\n-,,sp|P27695|APEX1_HUMAN,,,,,,L,D,Y,F,L,L,S,H,,,,,,LDYFLLSH,NVGWRLDYFLLSHSL,\n-,,tr|A0A0D9SGF6|A0A0D9SGF6_HUMAN; tr|A0A0D9SF54|A0A0D9SF54_HUMAN; sp|Q13813|SPTN1_HUMAN; sp|Q13813-3|SPTN1_HUMAN; sp|Q13813-2|SPTN1_HUMAN,E,L,P,T,A,F,D,Y,V,E,F,T,R,,,,,,ELPTAFDYVEFTR,ELPTAFDYVEFTRSL,\n-,,sp|O00299|CLIC1_HUMAN,D,E,E,I,E,L,A,Y,E,Q,V,A,K,,,,,,DEEIELAYEQVAK,DEEIELAYEQVAKAL,\n-,,tr|H7C2W9|H7C2W9_HUMAN; tr|C9JU56|C9JU56_HUMAN; tr|B7Z4E3|B7Z4E3_HUMAN; tr|B7Z4C8|B7Z4C8_HUMAN; sp|P62899|RL31_HUMAN; sp|P62899-3|RL31_HUMAN; sp|P62899-2|RL31_HUMAN,,,,,,,L,Y,T,L,V,T,Y,V,P,,,,LYTLVTYVP,EDSPNKLYTLVTYVP,\n-,,tr|H3BLZ8|H3BLZ8_HUMAN; sp|Q92841|DDX17_HUMAN; sp|Q92841-3|DDX17_HUMAN; sp|Q92841-2|DDX17_HUMAN; sp|Q92841-1|DDX17_HUMAN,,,,,,N,F,Y,V,E,H,P,E,V,A,,,,NFYVEHPEVA,PKFEKNFYVEHPEVA,\n-,,sp|O43390|HNRPR_HUMAN; sp|O43390-4|HNRPR_HUMAN; sp|O43390-2|HNRPR_HUMAN; sp|O60506|HNRPQ_HUMAN; sp|O60506-2|HNRPQ_HUMAN; sp|O60506-4|HNRPQ_HUMAN; sp|O60506-3|HNRPQ_HUMAN; tr|B7Z645|B7Z645_HUMAN,,,,,,T,G,Y,T,L,D,V,T,T,G,,,,TGYTLDVTTG,ALLERTGYTLDVTTG,\n-,,sp|Q96G03|PGM2_HUMAN; sp|Q96G03-2|PGM2_HUMAN,,,,,,,V,Y,W,D,N,G,A,Q,I,,,,VYWDNGAQI,QDNGYKVYWDNGAQI,\n-,,sp|Q9Y2X3|NOP58_HUMAN,,,,,,,,Y,G,L,I,Y,H,A,S,,,,YGLIYHAS,SRRDTPKYGLIYHAS,\n-,,tr|A0A087WVQ6|A0A087WVQ6_HUMAN; sp|Q00610|CLH1_HUMAN; sp|Q00610-2|CLH1_HUMAN,,,,,,,,Y,N,N,V,S,N,F,G,,,,YNNVSNFG,YDAAKLLYNNVSNFG,\n-,,tr|G8JLB6|G8JLB6_HUMAN; tr|E9PCY7|E9PCY7_HUMAN; sp|P31943|HNRH1_HUMAN; tr|H0YBD7|H0YBD7_HUMAN; tr|H0YB39|H0YB39_HUMAN,G,Y,G,G,Y,D,D,Y,N,G,Y,N,D,G,Y,,,,GYGGYDDYNGYNDGY,GYGGYDDYNGYNDGY,\n-,,sp|P31939|PUR9_HUMAN; sp|P31939-2|PUR9_HUMAN,,,,,N,G,N,Y,C,V,L,Q,M,D,Q,,,,NGNYCVLQMDQ,SKKKNGNYCVLQMDQ,\n-,,tr|J3KND3|J3KND3_HUMAN; tr|G8JLA2|G8JLA2_HUMAN; tr|G3V1V0|G3V1V0_HUMAN; tr|F8W1R7|F8W1R7_HUMAN; tr|F8VPF3|F8VPF3_HUMAN; tr|B7Z6Z4|B7Z6Z4_HUMAN; sp|P60660|MYL6_HUMAN; sp|P60660-2|MYL6_HUMAN,,,,,,I,L,Y,S,Q,C,G,D,V,M,,,,ILYSQCGDVM,TGDGKILYSQCGDVM,AGDGKILYSQCGDVM,\n-,,sp|P04899|GNAI2_HUMAN; sp|P04899-6|GNAI2_HUMAN; sp|P04899-5|GNAI2_HUMAN; sp|P04899-4|GNAI2_HUMAN; sp|P04899-3|GNAI2_HUMAN; sp|P04899-2|GNAI2_HUMAN,,,I,A,Q,S,D,Y,I,P,T,Q,Q,D,V,,,,IAQSDYIPTQQDV,ERIAQSDYIPTQQDV,\n-,,tr|K7EQA9|K7EQA9_HUMAN; tr|K7EIU0|K7EIU0_HUMAN; sp|Q16543|CDC37_HUMAN,G,L,D,P,V,E,V,Y,E,S,L,P,E,E,L,,,,GLDPVEVYESLPEEL,GLDPVEVYESLPEEL,\n-,,sp|P40939|ECHA_HUMAN; tr|H0YFD6|H0YFD6_HUMAN,,,D,G,P,G,F,Y,T,T,R,,,,,,,,DGPGFYTTR,VKDGPGFYTTRCLAP,\n-,,sp|P09211|GSTP1_HUMAN; tr|A8MX94|A8MX94_HUMAN,,,L,A,S,P,E,Y,V,N,L,P,I,N,G,,,,LASPEYVNLPING,AFLASPEYVNLPING,\n-,,tr|G8JLB6|G8JLB6_HUMAN; tr|E9PCY7|E9PCY7_HUMAN; sp|P31943|HNRH1_HUMAN; tr|H0YBD7|H0YBD7_HUMAN; tr|H0YB39|H0YB39_HUMAN,G,Y,D,D,Y,N,G,Y,N,D,G,Y,G,F,G,,,,GYDDYNGYNDGYGFG,GYDDYNGYNDGYGFG,\n-,,sp|P25205|MCM3_HUMAN; sp|P25205-2|MCM3_HUMAN,,V,Q,V,V,G,T,Y,R,,,,,,,,,,VQVVGTYR,RVQVVGTYRCLPGKK,\n-,,sp|Q9UKY7|CDV3_HUMAN; tr|D6R9V8|D6R9V8_HUMAN,,L,Q,L,D,N,Q,Y,A,V,L,E,N,Q,K,,,,LQLDNQYAVLENQK,KLQLDNQYAVLENQK,\n-,,tr|B0QY89|B0QY89_HUMAN; sp|Q9Y262|EIF3L_HUMAN; sp|Q9Y262-2|EIF3L_HUMAN,,Q,Y,E,Q,Q,T,Y,Q,V,I,P,E,V,I,,,,QYEQQTYQVIPEVI,RQYEQQTYQVIPEVI,\n-,,sp|P12235|ADT1_HUMAN; sp|P05141|ADT2_HUMAN; tr|V9GYG0|V9GYG0_HUMAN,,,,,,,Q,Y,K,G,I,I,D,C,V,,,,QYKGIIDCV,QISAEKQYKGIIDCV,QITADKQYKGIIDCV,\n-,,sp|P31948|STIP1_HUMAN; sp|P31948-3|STIP1_HUMAN; sp|P31948-2|STIP1_HUMAN,,,E,A,A,D,G,Y,Q,R,,,,,,,,,EAADGYQR,CKEAADGYQRCMMAQ,\n-,,sp|P53396|ACLY_HUMAN; sp|P53396-2|ACLY_HUMAN,,,,,D,G,V,Y,V,L,D,L,A,A,K,,,,DGVYVLDLAAK,VVTKDGVYVLDLAAK,\n-,,sp|P78527|PRKDC_HUMAN; sp|P78527-2|PRKDC_HUMAN,V,G,A,Y,M,L,M,Y,K,,,,,,,,,,VGAYMLMYK,VGAYMLMYKGANRTE,\n-,,sp|Q9H1E3|NUCKS_HUMAN,,,,K,V,V,D,Y,S,Q,F,Q,E,S,D,,,,KVVDYSQFQESD,RNRKVVDYSQFQESD,\n-,,sp|P09211|GSTP1_HUMAN; tr|A8MX94|A8MX94_HUMAN,,,,A,S,C,L,Y,G,Q,L,P,K,,,,,,ASCLYGQLPK,SLKASCLYGQ'..b',A,S,S,P,G,G,V,,,,SLYASSPGGV,PSTSRSLYASSPGGV,,,\r\n+,,sp|P62805|H4_HUMAN,,,,D,A,V,T,Y,T,E,H,A,K,,,,,,DAVTYTEHAK,VIRDAVTYTEHAKRK,,,\r\n+,,sp|P07900|HS90A_HUMAN; sp|P07900-2|HS90A_HUMAN,,I,E,P,I,D,E,Y,C,V,Q,Q,L,K,,,,,IEPIDEYCVQQLK,MIEPIDEYCVQQLKE,,,\r\n+,,sp|P50991|TCPD_HUMAN; sp|P50991-2|TCPD_HUMAN,,,,,,,A,Y,I,L,N,L,V,K,,,,,AYILNLVK,VLREERAYILNLVKQ,,,\r\n+,,sp|P61978-3|HNRPK_HUMAN; sp|P61978|HNRPK_HUMAN; sp|P61978-2|HNRPK_HUMAN; tr|Q5T6W2|Q5T6W2_HUMAN,,,,,,,A,Y,E,P,Q,G,G,S,G,,,,AYEPQGGSG,PSEWQMAYEPQGGSG,,,\r\n+,,sp|Q7KZF4|SND1_HUMAN,,S,E,A,V,V,E,Y,V,F,S,G,S,R,,,,,SEAVVEYVFSGSR,RSEAVVEYVFSGSRL,,,\r\n+,,tr|G3V4C1|G3V4C1_HUMAN; tr|B2R5W2|B2R5W2_HUMAN; sp|P07910-4|HNRPC_HUMAN; sp|P07910-2|HNRPC_HUMAN; tr|G3V4W0|G3V4W0_HUMAN; tr|B4DY08|B4DY08_HUMAN; tr|G3V251|G3V251_HUMAN; tr|G3V5X6|G3V5X6_HUMAN; tr|G3V3K6|G3V3K6_HUMAN,G,S,S,F,D,L,D,Y,D,F,Q,R,,,,,,,GSSFDLDYDFQR,GSSFDLDYDFQRDYY,GSSFDLDYDFQR,,\r\n+,,sp|P08238|HS90B_HUMAN,,D,N,S,T,M,G,Y,M,M,A,K,,,,,,,DNSTMGYMMAK,RDNSTMGYMMAKKHL,,,\r\n+,,sp|Q06830|PRDX1_HUMAN,,,T,I,A,Q,D,Y,G,V,L,K,,,,,,,TIAQDYGVLK,KRTIAQDYGVLKADE,,,\r\n+,,sp|P23193|TCEA1_HUMAN; sp|P23193-2|TCEA1_HUMAN; tr|B7Z4S1|B7Z4S1_HUMAN; tr|A0A0A0MT58|A0A0A0MT58_HUMAN; sp|Q15560|TCEA2_HUMAN; sp|Q15560-2|TCEA2_HUMAN,,,,,N,C,T,Y,T,Q,V,Q,T,R,,,,,NCTYTQVQTR,CKKKNCTYTQVQTRS,CRKKNCTYTQVQTRS,,\r\n+,,tr|K7EQ48|K7EQ48_HUMAN; tr|A0A0A0MTS2|A0A0A0MTS2_HUMAN; sp|P06744|G6PI_HUMAN; sp|P06744-2|G6PI_HUMAN,,,,,,V,W,Y,V,S,N,I,D,G,T,,,,VWYVSNIDGT,SGGPRVWYVSNIDGT,,,\r\n+,,sp|P23246|SFPQ_HUMAN; tr|H0Y9K7|H0Y9K7_HUMAN; sp|P23246-2|SFPQ_HUMAN,H,G,T,F,E,Y,E,Y,S,Q,R,,,,,,,,HGTFEYEYSQR,HGTFEYEYSQRWKSL,,,\r\n+,,tr|G3V0E5|G3V0E5_HUMAN; sp|P02786|TFR1_HUMAN,,,,,A,F,T,Y,I,N,L,D,K,,,,,,AFTYINLDK,LHLKAFTYINLDKAV,,,\r\n+,,tr|G3V0E5|G3V0E5_HUMAN; sp|P02786|TFR1_HUMAN,,,,N,E,N,S,Y,V,P,R,,,,,,,,NENSYVPR,KLLNENSYVPREAGS,,,\r\n+,,tr|Q5T123|Q5T123_HUMAN; tr|A0A087WV23|A0A087WV23_HUMAN; sp|Q9H299|SH3L3_HUMAN,,,,,,,V,Y,S,T,S,V,T,G,S,,,,VYSTSVTGS,MSGLRVYSTSVTGS,SMSGLRVYSTSVTGS,,\r\n+,,sp|O43776|SYNC_HUMAN,,E,P,F,P,T,I,Y,V,D,S,Q,K,,,,,,EPFPTIYVDSQK,KEPFPTIYVDSQKEN,,,\r\n+,,sp|P04406|G3P_HUMAN; sp|P04406-2|G3P_HUMAN,,,,,,,,Y,D,N,E,F,G,Y,S,,,,YDNEFGYS,FVKLISWYDNEFGYS,,,\r\n+,,sp|P11142|HSP7C_HUMAN; tr|E9PKE3|E9PKE3_HUMAN; tr|Q53FA3|Q53FA3_HUMAN; sp|P34931|HS71L_HUMAN; sp|P11021|GRP78_HUMAN,P,T,A,A,A,I,A,Y,G,L,D,K,,,,,,,PTAAAIAYGLDK,PTAAAIAYGLDKKVG,PTAAAIAYGLDKGGQ,PTAAAIAYGLDKREG,\r\n+,,sp|P50990-2|TCPQ_HUMAN; sp|P50990|TCPQ_HUMAN,,,,,,,L,Y,A,V,H,Q,E,G,N,,,,LYAVHQEGN,NEVISKLYAVHQEGN,,,\r\n+,,sp|P62273|RS29_HUMAN; sp|P62273-2|RS29_HUMAN,,,,,,,,Y,G,L,N,M,C,R,,,,,YGLNMCR,RHGLIRKYGLNMCRQ,,,\r\n+,,sp|P46977|STT3A_HUMAN; sp|P46977-2|STT3A_HUMAN,,,,E,N,D,Y,Y,T,P,T,G,E,F,R,,,,ENDYYTPTGEFR,HIKENDYYTPTGEFR,,,\r\n+,,sp|P22626|ROA2_HUMAN; sp|P22626-2|ROA2_HUMAN,,,,,,,Y,Y,E,Q,W,G,K,,,,,,YYEQWGK,EESLRNYYEQWGKLT,,,\r\n+,,sp|P19338|NUCL_HUMAN,,,,S,I,S,L,Y,Y,T,G,E,K,,,,,,SISLYYTGEK,DGRSISLYYTGEKGQ,,,\r\n+,,sp|P63010|AP2B1_HUMAN; sp|P63010-3|AP2B1_HUMAN; sp|P63010-2|AP2B1_HUMAN; tr|A0A087X253|A0A087X253_HUMAN; sp|Q10567|AP1B1_HUMAN; sp|Q10567-4|AP1B1_HUMAN; sp|Q10567-3|AP1B1_HUMAN; sp|Q10567-2|AP1B1_HUMAN,V,E,G,Q,D,M,L,Y,Q,S,L,K,,,,,,,VEGQDMLYQSLK,VEGQDMLYQSLKLTN,,,\r\n+,,tr|U3KQK0|U3KQK0_HUMAN; sp|Q99880|H2B1L_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|Q5QNW6-2|H2B2F_HUMAN; sp|P62807|H2B1C_HUMAN; sp|P58876|H2B1D_HUMAN; sp|O60814|H2B1K_HUMAN; sp|P57053|H2BFS_HUMAN,E,S,Y,S,V,Y,V,Y,K,,,,,,,,,,ESYSVYVYK,ESYSVYVYKVLKQVH,,,\r\n+,,tr|H0YB22|H0YB22_HUMAN; tr|E5RH77|E5RH77_HUMAN; sp|P62263|RS14_HUMAN,D,R,D,E,S,S,P,Y,A,A,M,L,A,A,Q,,,,DRDESSPYAAMLAAQ,DRDESSPYAAMLAAQ,,,\r\n+,,tr|B0QY89|B0QY89_HUMAN; sp|Q9Y262|EIF3L_HUMAN; sp|Q9Y262-2|EIF3L_HUMAN; tr|B0QY90|B0QY90_HUMAN,Y,D,N,V,H,P,N,Y,H,K,,,,,,,,,YDNVHPNYHK,YDNVHPNYHKEPFLQ,,,\r\n+,,tr|G3V4C1|G3V4C1_HUMAN; tr|B2R5W2|B2R5W2_HUMAN; sp|P07910-4|HNRPC_HUMAN; sp|P07910-2|HNRPC_HUMAN; tr|G3V4W0|G3V4W0_HUMAN; tr|B4DY08|B4DY08_HUMAN; tr|G3V251|G3V251_HUMAN; tr|G3V5X6|G3V5X6_HUMAN; tr|G3V3K6|G3V3K6_HUMAN,,,,,,V,Q,Y,V,N,E,R,,,,,,,VQYVNER,KGFAFVQYVNERNAR,,,\r\n' |
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| diff -r 24c09eccd392 -r 4b07046ee6d7 zippable Kinamine-JJ/test-data/output_Substrates123.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/zippable Kinamine-JJ/test-data/output_Substrates123.csv Fri May 04 12:20:27 2018 -0400 |
| b |
| @@ -0,0 +1,251 @@ +D,Q,T,E,Y,L,E,E,R +T,A,F,D,Y,V,E,F,T +I,E,L,A,Y,E,Q,V,A +G,Y,D,D,Y,N,G,Y,N +A,Q,S,D,Y,I,P,T,Q +P,V,E,V,Y,E,S,L,P +A,S,P,E,Y,V,N,L,P +D,Y,N,G,Y,N,D,G,Y +L,D,N,Q,Y,A,V,L,E +E,Q,Q,T,Y,Q,V,I,P +K,V,V,D,Y,S,Q,F,Q +A,S,C,L,Y,G,Q,L,P +Y,E,S,H,Y,A,L,P,L +T,F,D,D,Y,I,A,C,C +G,D,S,E,Y,N,I,M,F +A,E,D,G,Y,S,G,V,E +S,E,T,E,Y,A,L,L,R +A,E,E,T,Y,E,N,I,P +T,L,V,G,Y,S,M,V,G +G,A,E,V,Y,H,N,L,K +E,D,C,L,Y,E,T,V,K +E,K,P,N,Y,I,V,P,D +G,Q,P,D,Y,S,A,A,W +P,D,Q,Q,Y,L,I,L,N +T,L,V,T,Y,V,P,V,T +V,L,S,D,Y,V,G,S,G +G,D,V,C,Y,A,D,V,Y +D,A,N,L,Y,I,S,G,L +C,G,E,T,Y,H,S,D,L +Y,L,P,L,Y,S,S,S,T +I,Y,G,Q,Y,C,E,C,D +D,S,E,V,Y,Q,L,G,D +P,E,E,A,Y,I,A,D,L +D,V,I,L,Y,H,Q,P,D +D,T,W,D,Y,T,N,P,N +G,G,G,N,Y,G,P,G,G +E,L,E,S,Y,A,Y,S,L +V,E,S,A,Y,E,V,I,K +A,G,A,E,Y,V,V,E,S +A,F,V,Q,Y,V,N,E,R +F,Y,C,D,Y,C,D,T,Y +V,T,V,Y,Y,E,V,A,G +P,E,Y,A,Y,G,S,A,G +Y,F,G,I,Y,D,T,A,K +A,V,D,T,Y,I,P,V,P +H,I,A,N,Y,I,S,G,I +I,Q,E,H,Y,G,G,T,A +V,V,S,D,Y,A,Q,M,D +I,F,L,E,Y,A,S,P,A +I,G,L,V,Y,S,G,M,G +T,Q,E,E,Y,G,E,F,Y +S,Q,H,V,Y,Q,A,Y,E +Q,A,N,C,Y,E,E,V,K +P,I,D,E,Y,C,V,Q,Q +V,T,S,T,Y,G,W,T,A +H,S,L,D,Y,Y,N,T,C +Y,K,P,L,Y,I,P,S,N +Q,D,E,A,Y,L,A,S,L +G,T,T,M,Y,P,G,I,A +D,S,D,E,Y,S,N,P,A +T,E,V,N,Y,T,Q,L,V +Q,E,S,E,Y,G,N,I,T +S,L,E,N,Y,S,P,V,S +H,T,I,A,Y,L,T,P,L +T,N,E,E,Y,G,E,F,Y +G,Q,N,I,Y,N,A,C,C +T,Y,E,D,Y,V,E,G,L +V,E,V,E,Y,S,T,V,A +C,T,V,Y,Y,A,S,L,N +S,F,S,H,Y,S,G,L,K +P,L,A,T,Y,A,P,V,I +G,G,G,Q,Y,F,A,K,P +V,S,I,V,Y,D,Q,Q,S +A,P,Q,Y,Y,D,M,S,N +T,Y,T,A,Y,V,D,L,E +D,E,L,H,Y,T,Y,L,D +E,E,S,A,Y,V,A,G,E +V,L,D,N,Y,L,T,S,P +S,E,D,E,Y,N,L,L,S +F,L,S,P,Y,V,S,P,K +G,S,N,P,Y,T,T,V,T +H,Q,I,E,Y,Y,F,G,D +N,A,T,A,Y,G,I,S,K +G,Q,S,N,Y,G,F,A,N +T,V,P,A,Y,F,N,D,A +D,P,I,L,Y,R,P,V,A +A,V,E,E,Y,S,C,E,F +E,D,P,Y,Y,T,E,N,G +E,D,Y,Y,Y,H,P,P,P +I,Y,E,G,Y,A,L,P,H +D,L,T,L,Y,Q,S,N,T +E,L,A,P,Y,D,E,N,W +S,Q,G,A,Y,Q,E,A,F +S,T,G,I,Y,E,A,L,E +S,S,S,S,Y,G,S,G,R +S,T,Y,N,Y,S,L,P,I +L,S,P,P,Y,S,S,P,Q +K,G,T,V,Y,L,T,P,Y +L,S,M,A,Y,A,G,A,R +A,S,G,D,Y,I,D,S,S +Q,Y,A,S,Y,E,F,V,Q +D,H,P,F,Y,S,N,I,S +D,I,N,Y,Y,P,V,P,E +C,P,N,D,Y,H,Q,L,F +A,V,L,H,Y,G,H,A,G +V,S,D,E,Y,E,Q,L,S +P,G,S,D,Y,I,N,A,N +L,D,P,N,Y,V,L,S,S +F,F,Q,S,Y,G,N,V,V +A,H,G,G,Y,S,V,F,A +G,S,D,G,Y,G,S,G,R +Y,T,V,V,Y,F,P,V,R +P,E,D,H,Y,F,L,L,T +L,C,D,S,Y,E,I,R,P +P,T,P,Y,Y,W,Y,T,D +G,A,D,I,Y,S,G,C,C +I,A,P,Q,Y,Y,D,M,S +I,S,E,N,Y,Q,T,M,S +E,F,S,G,Y,V,Q,Q,V +N,Q,G,G,Y,G,G,S,S +S,Q,Q,A,Y,Q,E,A,F +G,M,T,G,Y,G,M,P,R +T,G,T,L,Y,I,A,E,S +I,S,V,Y,Y,N,E,A,T +D,G,N,G,Y,I,S,A,A +L,H,Y,T,Y,L,D,T,F +P,G,L,Y,Y,V,D,E,H +I,D,S,P,Y,E,I,S,R +A,G,T,L,Y,T,Y,P,E +D,D,E,S,Y,G,Q,I,F +T,G,E,V,Y,F,A,D,S +A,S,A,V,Y,V,L,D,L +T,H,P,E,Y,Y,E,E,M +F,G,G,Y,Y,C,P,C,H +V,V,E,A,Y,S,G,L,T +D,E,T,N,Y,G,I,P,Q +N,L,E,Q,Y,F,I,Q,Q +N,T,C,E,Y,P,N,E,D +L,G,D,Y,Y,Q,A,I,K +P,P,E,I,Y,S,D,T,Q +F,A,E,V,Y,F,A,Q,S +E,E,A,D,Y,C,I,Q,T +I,Y,E,G,Y,A,L,P,H +E,A,V,A,Y,G,A,A,V +N,Q,G,G,Y,G,S,V,G +G,Y,N,G,Y,G,G,G,P +N,E,F,D,Y,P,S,V,G +S,G,S,L,Y,E,M,V,S +F,V,I,N,Y,D,Y,P,N +G,T,E,D,Y,I,H,I,R +L,L,G,D,Y,Y,Q,A,I +C,T,Q,H,Y,E,L,C,S +S,S,S,D,Y,S,D,L,Q +L,E,E,I,Y,E,S,S,I +N,F,S,F,Y,P,T,F,Q +M,E,D,A,Y,H,E,H,Q +S,G,D,F,Y,D,L,Y,G +M,G,G,P,Y,G,G,G,N +I,G,D,E,Y,F,T,F,I +Y,V,A,S,Y,L,L,A,A +G,F,V,E,Y,T,E,Q,V +D,T,Q,T,Y,Q,P,Y,N +P,P,T,A,Y,I,D,F,A +T,F,H,Y,Y,S,C,E,R +H,S,V,N,Y,K,P,P,A +Y,C,D,T,Y,L,T,H,D +P,S,Y,N,Y,E,I,V,N +A,G,T,C,Y,Q,A,E,W +S,L,E,S,Y,A,F,N,M +D,K,N,D,Y,L,P,L,Y +P,E,P,D,Y,E,A,I,Q +P,S,G,T,Y,H,A,W,K +G,F,V,N,Y,V,T,A,K +S,Q,Q,A,Y,Q,E,A,F +D,Q,T,E,Y,L,E,E,R +E,F,A,E,Y,A,S,V,D +I,S,T,N,Y,Y,A,S,Q +E,G,G,Q,Y,G,L,V,A +D,Q,G,T,Y,E,D,Y,V +S,V,D,E,Y,Q,F,V,E +F,P,T,I,Y,F,S,P,A +G,E,V,T,Y,A,D,A,H +I,E,G,T,Y,I,D,K,K +G,I,L,L,Y,G,P,P,G +I,G,V,G,Y,T,Q,T,L +G,G,Q,G,Y,S,S,G,P +F,A,F,V,Y,F,E,N,V +A,L,L,A,Y,T,L,G,V +E,A,L,Y,Y,T,D,D,T +S,T,M,G,Y,M,A,A,K +P,H,G,G,Y,H,S,H,Y +N,N,A,V,Y,A,F,L,G +V,D,D,P,Y,A,T,F,V +T,V,P,A,Y,F,N,D,S +D,Q,G,T,Y,E,D,Y,V +G,Q,P,I,Y,I,Q,F,S +C,L,E,A,Y,T,G,I,V +I,T,P,S,Y,V,A,F,T +S,L,G,N,Y,I,V,A,S +L,G,Y,A,Y,V,N,F,Q +Q,V,H,Y,Y,E,D,G,N +S,D,A,Y,Y,C,T,G,D +L,E,E,I,Y,S,G,C,T +Y,A,A,A,Y,C,T,G,L +D,A,H,Y,Y,E,Q,N,E +I,D,I,N,Y,Y,P,V,P +S,G,L,A,Y,C,P,N,D +N,N,L,S,Y,D,C,I,G +S,V,F,Y,Y,E,I,L,N +A,L,E,S,Y,A,F,N,M +Q,Q,G,E,Y,S,E,A,I +H,D,E,G,Y,G,P,P,P +W,L,E,Q,Y,T,Q,A,I +C,N,D,L,Y,A,T,V,K +T,D,I,M,Y,T,G,T,L +A,E,D,G,Y,S,G,V,E +D,E,I,E,Y,E,N,Q,K +D,D,K,D,Y,F,L,F,R +G,V,L,F,Y,G,P,P,G +L,D,E,L,Y,G,T,W,R +S,D,A,Q,Y,Q,F,T,G +E,R,P,T,Y,T,N,L,N +E,V,T,A,Y,S,P,L,G +I,E,G,I,Y,D,T,L,K +T,L,V,T,Y,V,P,V,T +D,E,E,N,Y,L,D,L,F +G,Q,V,N,Y,E,E,F,V +A,P,D,E,Y,L,V,S,P +G,D,V,F,Y,L,H,S,R +E,A,A,S,Y,I,Q,S,K +G,A,E,V,Y,H,N,L,K +S,I,D,A,Y,D,N,F,D +G,N,A,V,Y,D,F,F,I +P,I,D,E,Y,C,V,Q,Q +V,G,I,N,Y,Q,P,P,T +D,D,K,D,Y,F,L,F,R +V,D,F,M,Y,V,E,L,I +I,N,Y,D,Y,P,N,S,S +I,N,V,Y,Y,N,E,A,T +V,E,S,A,Y,E,V,I,K +A,S,P,E,Y,V,N,L,P +Y,T,V,V,Y,F,P,V,R +S,L,D,Y,Y,N,T,C,E +L,S,H,Q,Y,W,S,A,P +P,I,D,E,Y,C,V,Q,Q +L,S,Q,L,Y,H,S,P,A +M,E,D,A,Y,H,E,H,Q +F,G,M,I,Y,D,S,L,D +A,Y,E,D,Y,Y,Y,H,P +E,E,Q,E,Y,V,Q,T,V +K,A,D,G,Y,N,Q,P,D |
| b |
| diff -r 24c09eccd392 -r 4b07046ee6d7 zippable Kinamine-JJ/test-data/outputtime.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/zippable Kinamine-JJ/test-data/outputtime.csv Fri May 04 12:20:27 2018 -0400 |
| b |
| b'@@ -0,0 +1,508 @@\n+"Substrates","Species","Reference","-7","-6","-5","-4","-3","-2","-1","0","1","2","3","4","5","6","7",NA,NA,NA,"Phosphite","","","",""\r\n+"","","sp|P08238|HS90B_HUMAN; sp|P07900|HS90A_HUMAN; sp|P07900-2|HS90A_HUMAN","","","","D","Q","T","E","Y","L","E","E","R","","","",NA,NA,NA,"DQTEYLEER","LKEDQTEYLEERRVK","LKEDQTEYLEERRIK","",""\r\n+"","","tr|A0A0D9SGF6|A0A0D9SGF6_HUMAN; tr|A0A0D9SF54|A0A0D9SF54_HUMAN; sp|Q13813|SPTN1_HUMAN; sp|Q13813-3|SPTN1_HUMAN; sp|Q13813-2|SPTN1_HUMAN","E","L","P","T","A","F","D","Y","V","E","F","T","R","","",NA,NA,NA,"ELPTAFDYVEFTR","ELPTAFDYVEFTRSL","","",""\r\n+"","","sp|O00299|CLIC1_HUMAN","D","E","E","I","E","L","A","Y","E","Q","V","A","K","","",NA,NA,NA,"DEEIELAYEQVAK","DEEIELAYEQVAKAL","","",""\r\n+"","","tr|G8JLB6|G8JLB6_HUMAN; tr|E9PCY7|E9PCY7_HUMAN; sp|P31943|HNRH1_HUMAN; tr|H0YBD7|H0YBD7_HUMAN; tr|H0YB39|H0YB39_HUMAN","G","Y","G","G","Y","D","D","Y","N","G","Y","N","D","G","Y",NA,NA,NA,"GYGGYDDYNGYNDGY","GYGGYDDYNGYNDGY","","",""\r\n+"","","sp|P04899|GNAI2_HUMAN; sp|P04899-6|GNAI2_HUMAN; sp|P04899-5|GNAI2_HUMAN; sp|P04899-4|GNAI2_HUMAN; sp|P04899-3|GNAI2_HUMAN; sp|P04899-2|GNAI2_HUMAN","","","I","A","Q","S","D","Y","I","P","T","Q","Q","D","V",NA,NA,NA,"IAQSDYIPTQQDV","ERIAQSDYIPTQQDV","","",""\r\n+"","","tr|K7EQA9|K7EQA9_HUMAN; tr|K7EIU0|K7EIU0_HUMAN; sp|Q16543|CDC37_HUMAN","G","L","D","P","V","E","V","Y","E","S","L","P","E","E","L",NA,NA,NA,"GLDPVEVYESLPEEL","GLDPVEVYESLPEEL","","",""\r\n+"","","sp|P09211|GSTP1_HUMAN; tr|A8MX94|A8MX94_HUMAN","","","L","A","S","P","E","Y","V","N","L","P","I","N","G",NA,NA,NA,"LASPEYVNLPING","AFLASPEYVNLPING","","",""\r\n+"","","tr|G8JLB6|G8JLB6_HUMAN; tr|E9PCY7|E9PCY7_HUMAN; sp|P31943|HNRH1_HUMAN; tr|H0YBD7|H0YBD7_HUMAN; tr|H0YB39|H0YB39_HUMAN","G","Y","D","D","Y","N","G","Y","N","D","G","Y","G","F","G",NA,NA,NA,"GYDDYNGYNDGYGFG","GYDDYNGYNDGYGFG","","",""\r\n+"","","sp|Q9UKY7|CDV3_HUMAN; tr|D6R9V8|D6R9V8_HUMAN","","L","Q","L","D","N","Q","Y","A","V","L","E","N","Q","K",NA,NA,NA,"LQLDNQYAVLENQK","KLQLDNQYAVLENQK","","",""\r\n+"","","tr|B0QY89|B0QY89_HUMAN; sp|Q9Y262|EIF3L_HUMAN; sp|Q9Y262-2|EIF3L_HUMAN","","Q","Y","E","Q","Q","T","Y","Q","V","I","P","E","V","I",NA,NA,NA,"QYEQQTYQVIPEVI","RQYEQQTYQVIPEVI","","",""\r\n+"","","sp|Q9H1E3|NUCKS_HUMAN","","","","K","V","V","D","Y","S","Q","F","Q","E","S","D",NA,NA,NA,"KVVDYSQFQESD","RNRKVVDYSQFQESD","","",""\r\n+"","","sp|P09211|GSTP1_HUMAN; tr|A8MX94|A8MX94_HUMAN","","","","A","S","C","L","Y","G","Q","L","P","K","","",NA,NA,NA,"ASCLYGQLPK","SLKASCLYGQLPKFQ","","",""\r\n+"","","tr|Q5JR95|Q5JR95_HUMAN; sp|P62241|RS8_HUMAN","","Q","W","Y","E","S","H","Y","A","L","P","L","G","R","",NA,NA,NA,"QWYESHYALPLGR","RQWYESHYALPLGRK","","",""\r\n+"","","sp|O14979|HNRDL_HUMAN; sp|O14979-2|HNRDL_HUMAN; tr|A0A087WUK2|A0A087WUK2_HUMAN; sp|O14979-3|HNRDL_HUMAN","","M","E","D","M","N","E","Y","S","N","I","E","E","F","A",NA,NA,NA,"MEDMNEYSNIEEFA","TMEDMNEYSNIEEFA","MEDMNEYSNIEEFA","",""\r\n+"","","tr|C9J0K6|C9J0K6_HUMAN; tr|B4DHQ6|B4DHQ6_HUMAN; sp|P30626|SORCN_HUMAN; sp|P30626-3|SORCN_HUMAN; sp|P30626-2|SORCN_HUMAN","","","I","T","F","D","D","Y","I","A","C","C","V","K","",NA,NA,NA,"ITFDDYIACCVK","GKITFDDYIACCVKL","","",""\r\n+"","","sp|P27797|CALR_HUMAN","D","M","H","G","D","S","E","Y","N","I","M","F","G","P","D",NA,NA,NA,"DMHGDSEYNIMFGPD","DMHGDSEYNIMFGPD","","",""\r\n+"","","tr|H0YEU2|H0YEU2_HUMAN; tr|E9PL09|E9PL09_HUMAN; sp|P23396|RS3_HUMAN; sp|P23396-2|RS3_HUMAN","","E","L","A","E","D","G","Y","S","G","V","E","V","R","",NA,NA,NA,"ELAEDGYSGVEVR","RELAEDGYSGVEVRV","","",""\r\n+"","","tr|E9PLW0|E9PLW0_HUMAN; sp|Q5JQS6|GSAML_HUMAN; sp|Q5JQS6-2|GSAML_HUMAN","","","","S","E","T","E","Y","A","L","L","R","","","",NA,NA,NA,"SETEYALLR","RERSETEYALLRTSV","","",""\r\n+"","","sp|O00410|IPO5_HUMAN; sp|O00410-3|IPO5_HUMAN; tr|E7EX05|E7EX05_HUMAN; tr|E7EWK4|E7EWK4_HUMAN; tr|E7EV12|E7EV12_HUMAN; tr|E7ETV8|E7ETV8_HUMAN; tr|E7ETV3|E7ETV3_HUMAN; tr|E7ESZ1|E7ESZ1_HUMAN; tr|E7ESA1|E7ESA1_HUMAN; tr|E7EQT5|E7EQT5_HUMAN; tr|C9JZD8|C9JZD8_HUMAN; tr|C9JXE0|C9JXE0_HUMAN; tr|'..b'NA,NA,"QNVAYEYLCHLE","RRRQNVAYEYLCHLE","","",""\r\n+"","","sp|O60506|HNRPQ_HUMAN; sp|O60506-2|HNRPQ_HUMAN; sp|O60506-4|HNRPQ_HUMAN; sp|O60506-3|HNRPQ_HUMAN","","","","L","D","E","I","Y","V","A","G","L","V","A","H",NA,NA,NA,"LDEIYVAGLVAH","AEKLDEIYVAGLVAH","","",""\r\n+"","","sp|A6NHR9|SMHD1_HUMAN; sp|A6NHR9-2|SMHD1_HUMAN; tr|J3KTL8|J3KTL8_HUMAN; sp|A6NHR9-3|SMHD1_HUMAN","","","","D","S","T","E","Y","F","I","V","F","E","P","R",NA,NA,NA,"DSTEYFIVFEPR","PGRDSTEYFIVFEPR","","",""\r\n+"","","tr|S6FRS6|S6FRS6_HUMAN; sp|Q9NSI8|SAMN1_HUMAN; sp|Q9NSI8-3|SAMN1_HUMAN","","L","D","D","D","G","P","Y","S","G","P","F","C","G","R",NA,NA,NA,"LDDDGPYSGPFCGR","RLDDDGPYSGPFCGR","","",""\r\n+"","","sp|P47985|UCRI_HUMAN; sp|P0C7P4|UCRIL_HUMAN","","A","G","D","F","G","G","Y","Y","C","P","C","H","G","S",NA,NA,NA,"AGDFGGYYCPCHGS","NAGDFGGYYCPCHGS","","",""\r\n+"","","sp|P46940|IQGA1_HUMAN","","Q","N","V","A","Y","E","Y","L","C","H","L","E","E","A",NA,NA,NA,"QNVAYEYLCHLEEA","RQNVAYEYLCHLEEA","","",""\r\n+"","","sp|Q9NX46|ARHL2_HUMAN","","","","T","E","A","L","Y","Y","T","D","D","T","A","M",NA,NA,NA,"TEALYYTDDTAM","SERTEALYYTDDTAM","","",""\r\n+"","","sp|P31689|DNJA1_HUMAN; sp|P31689-2|DNJA1_HUMAN","","","Q","I","S","Q","A","Y","E","V","L","S","D","A","K",NA,NA,NA,"QISQAYEVLSDAK","FKQISQAYEVLSDAK","","",""\r\n+"","","tr|Q5SX87|Q5SX87_HUMAN; sp|P50395|GDIB_HUMAN; sp|P50395-2|GDIB_HUMAN; tr|Q5SX91|Q5SX91_HUMAN","D","Y","L","D","Q","P","C","Y","E","T","I","N","R","","",NA,NA,NA,"DYLDQPCYETINR","DYLDQPCYETINRIK","","",""\r\n+"","","sp|P42704|LPPRC_HUMAN; tr|C9JCA9|C9JCA9_HUMAN; tr|B8ZZ38|B8ZZ38_HUMAN; tr|A0A0C4DG06|A0A0C4DG06_HUMAN","","","","L","G","A","V","Y","D","V","S","H","Y","N","A",NA,NA,NA,"LGAVYDVSHYNA","LQKLGAVYDVSHYNA","","",""\r\n+"","","sp|P62805|H4_HUMAN","","","","D","A","V","T","Y","T","E","H","A","K","","",NA,NA,NA,"DAVTYTEHAK","VIRDAVTYTEHAKRK","","",""\r\n+"","","sp|P07900|HS90A_HUMAN; sp|P07900-2|HS90A_HUMAN","","I","E","P","I","D","E","Y","C","V","Q","Q","L","K","",NA,NA,NA,"IEPIDEYCVQQLK","MIEPIDEYCVQQLKE","","",""\r\n+"","","sp|Q7KZF4|SND1_HUMAN","","S","E","A","V","V","E","Y","V","F","S","G","S","R","",NA,NA,NA,"SEAVVEYVFSGSR","RSEAVVEYVFSGSRL","","",""\r\n+"","","tr|G3V4C1|G3V4C1_HUMAN; tr|B2R5W2|B2R5W2_HUMAN; sp|P07910-4|HNRPC_HUMAN; sp|P07910-2|HNRPC_HUMAN; tr|G3V4W0|G3V4W0_HUMAN; tr|B4DY08|B4DY08_HUMAN; tr|G3V251|G3V251_HUMAN; tr|G3V5X6|G3V5X6_HUMAN; tr|G3V3K6|G3V3K6_HUMAN","G","S","S","F","D","L","D","Y","D","F","Q","R","","","",NA,NA,NA,"GSSFDLDYDFQR","GSSFDLDYDFQRDYY","GSSFDLDYDFQR","",""\r\n+"","","sp|P08238|HS90B_HUMAN","","D","N","S","T","M","G","Y","M","M","A","K","","","",NA,NA,NA,"DNSTMGYMMAK","RDNSTMGYMMAKKHL","","",""\r\n+"","","sp|Q06830|PRDX1_HUMAN","","","T","I","A","Q","D","Y","G","V","L","K","","","",NA,NA,NA,"TIAQDYGVLK","KRTIAQDYGVLKADE","","",""\r\n+"","","sp|O43776|SYNC_HUMAN","","E","P","F","P","T","I","Y","V","D","S","Q","K","","",NA,NA,NA,"EPFPTIYVDSQK","KEPFPTIYVDSQKEN","","",""\r\n+"","","sp|P11142|HSP7C_HUMAN; tr|E9PKE3|E9PKE3_HUMAN; tr|Q53FA3|Q53FA3_HUMAN; sp|P34931|HS71L_HUMAN; sp|P11021|GRP78_HUMAN","P","T","A","A","A","I","A","Y","G","L","D","K","","","",NA,NA,NA,"PTAAAIAYGLDK","PTAAAIAYGLDKKVG","PTAAAIAYGLDKGGQ","PTAAAIAYGLDKREG",""\r\n+"","","sp|P46977|STT3A_HUMAN; sp|P46977-2|STT3A_HUMAN","","","","E","N","D","Y","Y","T","P","T","G","E","F","R",NA,NA,NA,"ENDYYTPTGEFR","HIKENDYYTPTGEFR","","",""\r\n+"","","sp|P19338|NUCL_HUMAN","","","","S","I","S","L","Y","Y","T","G","E","K","","",NA,NA,NA,"SISLYYTGEK","DGRSISLYYTGEKGQ","","",""\r\n+"","","sp|P63010|AP2B1_HUMAN; sp|P63010-3|AP2B1_HUMAN; sp|P63010-2|AP2B1_HUMAN; tr|A0A087X253|A0A087X253_HUMAN; sp|Q10567|AP1B1_HUMAN; sp|Q10567-4|AP1B1_HUMAN; sp|Q10567-3|AP1B1_HUMAN; sp|Q10567-2|AP1B1_HUMAN","V","E","G","Q","D","M","L","Y","Q","S","L","K","","","",NA,NA,NA,"VEGQDMLYQSLK","VEGQDMLYQSLKLTN","","",""\r\n+"","","tr|H0YB22|H0YB22_HUMAN; tr|E5RH77|E5RH77_HUMAN; sp|P62263|RS14_HUMAN","D","R","D","E","S","S","P","Y","A","A","M","L","A","A","Q",NA,NA,NA,"DRDESSPYAAMLAAQ","DRDESSPYAAMLAAQ","","",""\r\n' |
| b |
| diff -r 24c09eccd392 -r 4b07046ee6d7 zippable Kinamine-JJ/test-data/outputtime2.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/zippable Kinamine-JJ/test-data/outputtime2.csv Fri May 04 12:20:27 2018 -0400 |
| b |
| b'@@ -0,0 +1,507 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