| Previous changeset 8:37b6e6c43ef8 (2016-04-14) Next changeset 10:9847c403d2d8 (2016-04-14) |
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modified:
pieplot_macs/pieplots_macs.py |
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| diff -r 37b6e6c43ef8 -r 4bbea0c6efd5 pieplot_macs/pieplots_macs.py --- a/pieplot_macs/pieplots_macs.py Thu Apr 14 19:05:32 2016 -0400 +++ b/pieplot_macs/pieplots_macs.py Thu Apr 14 19:24:26 2016 -0400 |
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| @@ -23,7 +23,7 @@ from matplotlib import pyplot as plt matplotlib.rcParams['pdf.fonttype']=42 matplotlib.rcParams['font.size']=14 -# import pandas as pd +import pandas as pd from argparse import ArgumentParser def map_peaks(gene,peak,outfile,macsFlag): @@ -41,31 +41,23 @@ chrom = words[2] if macsFlag: - print "macsflag on" start = int(words[3])-1 dist = abs(int(words[12])) - print dist maptype = words[14] if maptype == 'gene': maptype = words[15] else: - print "macsflag off" try: - print words start = int(words[3]) dist = abs(int(words[15])) - print dist maptype = words[16] if maptype == 'gene': maptype = words[17] except: - print 'trigger except' + print 'there probably were not enough columns in the genefile' pass - print "dist:" - print dist - print "that was dist" if chrom not in peaks: #new chrom @@ -128,8 +120,6 @@ args=parser.parse_args() - print args.MACS - map_peaks(args.genefile, args.peakfile, args.outfile, args.MACS) |