Repository 'package_r_3_1_2'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/package_r_3_1_2

Changeset 4:4d2fd1413b56 (2016-04-07)
Previous changeset 3:c987143177d4 (2015-11-04)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit 9a9d44116b21d9a155b5cc274475e78c14915059
modified:
tool_dependencies.xml
b
diff -r c987143177d4 -r 4d2fd1413b56 tool_dependencies.xml
--- a/tool_dependencies.xml Wed Nov 04 09:57:12 2015 -0500
+++ b/tool_dependencies.xml Thu Apr 07 11:23:03 2016 -0400
b
b'@@ -4,7 +4,7 @@\n         <install version="1.0">\n             <actions_group>\n                 <actions architecture="x86_64" os="linux">\n-                    <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.1.2-Linux-x84_64.tgz</action>\n+                    <action sha256sum="586dde39d6821bcc5079004450f5d19f836a26d4554083c7add3933f071451e0" type="download_by_url">https://depot.galaxyproject.org/software/r/r_3.1.2_linux_x64.tar.gz</action>\n                     <action type="move_directory_files">\n                         <source_directory>.</source_directory>\n                         <destination_directory>$INSTALL_DIR</destination_directory>\n@@ -14,69 +14,53 @@\n                         <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>\n                     </action>\n                 </actions>\n-                <actions architecture="x86_64" os="darwin">\n-                    <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action>\n+                <actions>\n+                    <action sha256sum="bcd150afcae0e02f6efb5f35a6ab72432be82e849ec52ce0bb89d8c342a8fa7a" type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action>\n                     <package name="readline" version="6.2">\n                         <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n                     </package>\n                     <package name="libpng" version="1.6.7">\n-                        <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+                        <repository changeset_revision="3de32cd300a9" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n                     </package>\n                     <package name="cairo" version="1.12.14">\n-                        <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+                        <repository changeset_revision="cd2ed5717e38" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n                     </package>\n                     <package name="pixman" version="0.32.4">\n-                        <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+                        <repository changeset_revision="93cd8e03820c" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n                     </package>\n                     <package name="freetype" version="2.5.2">\n-                        <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+                        <repository changeset_revision="a65217367e4a" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n                     </package>\n                     <package name="ncurses" version="5.9">\n-                        <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+                        <repository changeset_revision="a6cbb3aaecf6" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+                    </package>\n+   '..b'>\n-                        <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n+                        <repository changeset_revision="93cd8e03820c" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n                             <package name="pixman" version="0.32.4" />\n                         </repository>\n-                        <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n+                        <repository changeset_revision="a65217367e4a" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n                             <package name="freetype" version="2.5.2" />\n                         </repository>\n-                        <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n+                        <repository changeset_revision="a6cbb3aaecf6" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n                             <package name="ncurses" version="5.9" />\n                         </repository>\n+                        <repository changeset_revision="466900d2014a" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n+                            <package name="fontconfig" version="2.11.1" />\n+                        </repository>\n                     </action>\n-                    <action type="shell_command">\n-                        export LDFLAGS="-L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" &amp;&amp;\n-                        export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" &amp;&amp; \n-                        export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &amp;&amp;\n-                        export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &amp;&amp;\n-                        export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" &amp;&amp;\n-                        export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &amp;&amp;\n-                        export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &amp;&amp;\n-                        export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &amp;&amp;\n-                        export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" &amp;&amp;\n-                        ./configure --with-tcltk \\\n-                                    --with-blas \\\n-                                    --with-lapack \\\n-                                    --with-readline \\\n-                                    --with-cairo \\\n-                                    --with-libpng \\\n-                                    --without-x \\\n-                                    --enable-R-shlib \\\n-                                    --disable-R-framework \\\n-                                    --libdir=$INSTALL_DIR/lib \\\n-                                    --prefix=$INSTALL_DIR \n-                    </action>\n-                    <action type="make_install" />\n+                    <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action>\n                     <action type="shell_command">sed -i.bak -e \'s;$INSTALL_DIR;\\${R_ROOT_DIR};g\' $INSTALL_DIR/bin/R</action>\n                     <action type="shell_command">sed -i.bak -e \'s;$INSTALL_DIR;\\${R_ROOT_DIR};g\' $INSTALL_DIR/lib/R/bin/R</action>\n                 </actions>\n'