| Previous changeset 5:d03353742508 (2021-05-06) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 747394d19e88a569a5154615e366ea0401c820dd |
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modified:
commet.xml macros.xml |
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| diff -r d03353742508 -r 4daa32d21ea5 commet.xml --- a/commet.xml Thu May 06 12:45:20 2021 +0000 +++ b/commet.xml Sat Oct 05 19:55:07 2024 +0000 |
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| @@ -1,10 +1,11 @@ -<tool id="commet" name="Commet" version="24.7.14+galaxy0" profile="@PROFILE@"> +<tool id="commet" name="Commet" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>COmpare Multiple METagenomes</description> <macros> + <token name="@TOOL_VERSION@">24.7.14</token> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="24.7.14">commet</requirement> + <requirement type="package" version="@TOOL_VERSION@">commet</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #for $i, $set in enumerate($sets): @@ -45,29 +46,28 @@ <param name="percentage_outputs" label="Generate percentage files" type="boolean" checked="false"/> </inputs> <outputs> - <data format="csv" name="matrix_plain" from_work_dir="output_commet/matrix_plain.csv" label="Matrix plain with ${tool.name} on ${on_string}" > + <data format="csv" name="matrix_plain" from_work_dir="output_commet/matrix_plain.csv" label="${tool.name} on ${on_string}: Matrix plain" > <filter>plain_outputs</filter> </data> - <data format="csv" name="matrix_percentage" from_work_dir="output_commet/matrix_percentage.csv" label="Matrix percentage with ${tool.name} on ${on_string}" > + <data format="csv" name="matrix_percentage" from_work_dir="output_commet/matrix_percentage.csv" label="${tool.name} on ${on_string}: Matrix percentage" > <filter>percentage_outputs</filter> </data> - <data format="csv" name="matrix_normalized" from_work_dir="output_commet/matrix_normalized.csv" label="Matrix normalized with ${tool.name} on ${on_string}" > + <data format="csv" name="matrix_normalized" from_work_dir="output_commet/matrix_normalized.csv" label="${tool.name} on ${on_string}: Matrix normalized" > <filter>normalized_outputs</filter> </data> - <data format="png" name="dendrogram_normalized" from_work_dir="output_commet/dendrogram_normalized.png" label="Dendrogram ${tool.name} on ${on_string}" /> - <data format="png" name="heatmap_normalized" from_work_dir="output_commet/heatmap_normalized.png" label="Heatmap normalized with ${tool.name} on ${on_string}" > + <data format="png" name="dendrogram_normalized" from_work_dir="output_commet/dendrogram_normalized.png" label="${tool.name} on ${on_string}: Dendrogram" /> + <data format="png" name="heatmap_normalized" from_work_dir="output_commet/heatmap_normalized.png" label="${tool.name} on ${on_string}: Heatmap normalized" > <filter>normalized_outputs</filter> </data> - <data format="png" name="heatmap_percentage" from_work_dir="output_commet/heatmap_percentage.png" label="Heatmap percentage with ${tool.name} on ${on_string}" > + <data format="png" name="heatmap_percentage" from_work_dir="output_commet/heatmap_percentage.png" label="${tool.name} on ${on_string}: Heatmap percentage" > <filter>percentage_outputs</filter> </data> - <data format="png" name="heatmap_plain" from_work_dir="output_commet/heatmap_plain.png" label="Heatmap Plain with ${tool.name} on ${on_string}" > + <data format="png" name="heatmap_plain" from_work_dir="output_commet/heatmap_plain.png" label="${tool.name} on ${on_string}: Heatmap Plain" > <filter>plain_outputs</filter> </data> </outputs> <tests> - <test> - <param name="input_type" value="list" /> + <test expect_num_outputs="5"> <repeat name="sets"> <param name="reads" value="commet/A.fa.gz" ftype="fasta.gz" /> </repeat> @@ -80,6 +80,11 @@ <param name="plain_outputs" value="True"/> <output name="dendrogram_normalized" file="commet/dendrogram.png" compare="sim_size" delta="10000"/> <output name="matrix_plain" file="commet/matrix_plain.csv"/> + <output name="heatmap_plain"> + <assert_contents> + <has_size size="1k"/> + </assert_contents> + </output> </test> </tests> <help><![CDATA[ |
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| diff -r d03353742508 -r 4daa32d21ea5 macros.xml --- a/macros.xml Thu May 06 12:45:20 2021 +0000 +++ b/macros.xml Sat Oct 05 19:55:07 2024 +0000 |
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| @@ -1,11 +1,10 @@ <macros> - <token name="@DISCOSNP_VERSION@">2.5.4</token> - <token name="@PROFILE@">20.01</token> + <token name="@PROFILE@">23.1</token> <xml name="discosnp_requirements"> <requirements> - <requirement type="package" version="@DISCOSNP_VERSION@">discosnp</requirement> + <requirement type="package" version="@TOOL_VERSION@">discosnp</requirement> </requirements> </xml> |