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Commit message:
Uploaded |
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added:
beagle_impute.xml |
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| diff -r 27fb6c2a98a3 -r 4e97cb4310ac beagle_impute.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/beagle_impute.xml Fri Oct 21 06:31:06 2016 -0400 |
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| @@ -0,0 +1,13 @@ +<tool id="Beagle_impute" name="Beagle_impute" > + <description> beagle as a imputation tools, required phased reference file in VCF format</description> + <command interpreter="bash">beagle_impute.sh $vcf_input $reference </command> + <inputs> + <param format="vcf" name="vcf_input" type="data" label="VCF file to impute"/> + <param format="vcf" name="reference" type="data" label="reference file"/> + </inputs> + <outputs> + <data format="vcf" name="vcf_ouput" label="Phased and imputed VCF" from_work_dir="out_imputed.vcf.gz"/> + <data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/> + </outputs> + + </tool> \ No newline at end of file |