| Next changeset 1:dda44fd49bcd (2021-08-26) |
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Commit message:
"planemo upload commit 5c6a5c0f9aacbc7def652b33cc35ee37aa543d05-dirty" |
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repeatmodeler.xml test-data/consensi.fa.classified test-data/eco.fasta |
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| diff -r 000000000000 -r 4f0c878b36d4 repeatmodeler.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repeatmodeler.xml Tue Nov 24 04:14:46 2020 +0000 |
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| @@ -0,0 +1,135 @@ +<tool id="repeatmodeler" name="RepeatModeler - Model repetitive DNA" version="0.1.0" python_template_version="3.5"> + <requirements> + <requirement type="package" version="2.0.1">repeatmodeler</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + BuildDatabase -name '$name' '$input_file' && RepeatModeler -database '$name' -pa '$pa' && cp '$name'-families.fa '$output' + ]]></command> + <inputs> + <param type="data" name="input_file" format="fasta" label="Input genome fasta"/> + <param argument="-name" type="text" value="" label="Title for building database" /> + <param argument="-pa" type="text" value="" label="Numer of paralleled job: # of nodes" /> + </inputs> + <outputs> + <!-- <data format="fasta" name="RepeatModels" from_work_dir="*-families.fa" label="${tool.name} on ${on_string}: RepeatModels::FASTA" /> --> + <!-- <data format="txt" name="StockholmFormat" from_work_dir="*-families.stk" label="${tool.name} on ${on_string}: RepeatModels::StockholmFormat" /> --> + <data format="fasta" name="output" label="${tool.name} on ${on_string}: RepeatModels::FASTA" /> + </outputs> + <tests> + <test> + <param name="input_file" value="eco.fasta" ftype="fasta"/> + <param name="name" value="eco" /> + <param name="pa" value="4" /> + <output name="output" file="consensi.fa.classified" compare="sim_size" delta_frac="0.1" /> + </test> + </tests> + <help><![CDATA[ + RepeatModeler - 2.0.1 + + NAME + RepeatModeler - Model repetitive DNA + + SYNOPSIS + RepeatModeler [-options] -database <XDF Database> + + DESCRIPTION + The options are: + + -h(elp) + Detailed help + + -database <DBNAME> + The name of the sequence database to run an analysis on. This is the + name that was provided to the BuildDatabase script using the "-name" + option. + + -pa # + Specify the number of parallel search jobs to run. RMBlast jobs will + use 4 cores each and ABBlast jobs will use a single core each. i.e. + on a machine with 12 cores and running with RMBlast you would use + -pa 3 to fully utilize the machine. + + -recoverDir <Previous Output Directory> + If a run fails in the middle of processing, it may be possible + recover some results and continue where the previous run left off. + Simply supply the output directory where the results of the failed + run were saved and the program will attempt to recover and continue + the run. + + -srand # + Optionally set the seed of the random number generator to a known + value before the batches are randomly selected ( using Fisher Yates + Shuffling ). This is only useful if you need to reproduce the sample + choice between runs. This should be an integer number. + + -LTRStruct [optional] + Run the LTR structural discovery pipeline ( LTR_Harvest and + LTR_retreiver ) and combine results with the RepeatScout/RECON + pipeline. [optional] + + -genomeSampleSizeMax # + Optionally change the maximum bp of the genome to sample in all + rounds of RECON (default=243000000). + + CONFIGURATION OVERRIDES + -ltr_retriever_dir <string> + The path to the installation of the LTR_Retriever structural LTR + analysis package. + + -rmblast_dir <string> + The path to the installation of the RMBLAST sequence alignment + program. + + -repeatmasker_dir <string> + The path to the installation of RepeatMasker. + + -trf_prgm <string> + The full path including the name for the TRF program ( 4.0.9 or + higher ) + + -ninja_dir <string> + The path to the installation of the Ninja phylogenetic analysis + package. + + -recon_dir <string> + The path to the installation of the RECON de-novo repeatfinding + program. + + -genometools_dir <string> + The path to the installation of the GenomeTools package. + + -abblast_dir <string> + The path to the installation of the ABBLAST sequence alignment + program. + + -rscout_dir <string> + The path to the installation of the RepeatScout ( 1.0.6 or higher ) + de-novo repeatfinding program. + + -mafft_dir <string> + The path to the installation of the MAFFT multiple alignment + program. + + -cdhit_dir <string> + The path to the installation of the CD-Hit sequence clustering + package. + + SEE ALSO + RepeatMasker, RMBlast + + COPYRIGHT + Copyright 2005-2019 Institute for Systems Biology + + AUTHOR + RepeatModeler: + Robert Hubley <rhubley@systemsbiology.org> + Arian Smit <asmit@systemsbiology.org> + + LTR Pipeline Extensions: + Jullien Michelle Flynn <jmf422@cornell.edu> + ]]></help> + <citations> + <citation type="doi">10.1073/pnas.1921046117</citation> + <citation type="doi">10.1186/s13059-018-1577-z</citation> + </citations> +</tool> |
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| diff -r 000000000000 -r 4f0c878b36d4 test-data/consensi.fa.classified --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/consensi.fa.classified Tue Nov 24 04:14:46 2020 +0000 |
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| b'@@ -0,0 +1,916 @@\n+>rnd-1_family-1#Unknown ( RepeatScout Family Size = 202, Final Multiple Alignment Size = 100, Localized to 1 out of 1 contigs )\n+ACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTTGTATTATC\n+CCTCCAGTGCAGAGAAAATCGGCCAGTTTTCTCTGCCTGCAGTCCGCATG\n+CCGTATCGGGCCTTGGGTTCTAACCTGTTGCGTAGATTTATGCAGCGGAC\n+TGCCTTTCTCCCAAAGTGATAAACCGGACAGTATCATGGACCGGTTTTCC\n+CGGTAATCCGTATTTGCAAGGTTGGTTTCACTATGGAACATGAACTTCAT\n+TATATCGGTATCGACACCGCTAAAGAGAAACTGGATGTCGATGTGTTGCG\n+TCCTGATGGTCGTCATCGCACCAAAAAATTCGCTAACACCACTAAAGGGC\n+ACGATGAGCTGGTGAGCTGGCTGAAAGGTCACAAGATTGACCATGCGCAT\n+ATCTGCATCGAAGCGACCGGCACCTATATGGAACCTGTCGCTGAGTGCCT\n+TTACGATGCTGGCTACATAGTGTCAGTCATTAATCCTGCGCTGGGTAAAG\n+CTTTCGCTCAGAGTGAAGGACTGCGTAACAAGACTGATACCGTGGATGCG\n+CGCATGCTGGCAGAGTTCTGTCGTCAGAAGCGCCCTGCAGCCTGGGAAGC\n+GCCTCACCCGCTTGAACGCGCGTTGCGTGCCCTGGTAGTCCGCCACCAGG\n+CGCTGACAGATATGCACACGCAGGAACTGAATCGCACTGAAACGGCGCGG\n+GAAGTCCAGAGACCGAGCATTGATGCTCACCTTCTGTGGCTTGAAGCAGA\n+GCTGAAGCGTCTTGAGAAGCAGATAAAAGACCTGACAGACGATGATCCGG\n+ATATGAAACACCGCAGGAAACTGCTGGAAAGCATCCCGGGTATCGGAGAG\n+AAAACATCTGCGGTATTGCTGGCTTATATCGGTCTGAAGGACCGCTTCGC\n+CCATGCCAGACAGTTCGCCGCTTTTGCGGGTCTGACACCACGGCGTTATG\n+AATCAGGTAGCAGTGTGAGAGGGGCGAGCCGGATGAGTAAGGCCGGACAT\n+GTGTCGCTTCGCAGGGCGTTGTATATGCCCGCAATGGTAGCCACCAGTAA\n+GACTGAGTGGGGACGGGCGTTCCGCGACCGTCTGGCGGCTAATGGCAAGA\n+AAGGAAAGGTGATTCTCGGCGCGATGATGCGCAAGCTGGCACAGGTGGCG\n+TATGGAGTGCTGAAGTCAGGCGTGCCGTTCGATGCGTCACGGCATAATCC\n+GGTAGCGGCGTAAAAATCGCGGAAGGGATGAAAAAAACAGCGCCTGACGG\n+CGCTGTGTCTGGCATGCCTGCAATCCGGGAAACCGGACCAGGAAAAAACT\n+TGCAGGCCATAACAGTATCTACGTAATCTCTGCAATATATTGAATTTGCA\n+CGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA\n+>rnd-1_family-0#Unknown ( RepeatScout Family Size = 205, Final Multiple Alignment Size = 100, Localized to 1 out of 1 contigs )\n+CAAAGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCT\n+ACAAAATCGTGCAAATTCAATANATTGCAGAGATCNTGTAGGCCTGATAA\n+GCGTAGCGCATCAGGCAATTTTGCGTTTG\n+>rnd-1_family-2#Unknown ( RepeatScout Family Size = 38, Final Multiple Alignment Size = 38, Localized to 1 out of 1 contigs )\n+GTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGG\n+GTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGCCAGCGGTCCG\n+GCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGA\n+TGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACA\n+ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAA\n+AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGG\n+AATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGC\n+CTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAG\n+GTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGG\n+GTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTC\n+CTTACCTTAAAGAATNCGTATCTTCGCAGTGCCCACACAGATTGTCTGAT\n+GAATTGTTAANGAGCAGTAAGGCGTCTACGGGCTTGTAGCTCAGTTGGTT\n+AGAGCGCGCCCCTNATAAGGGCGAGGTCGCCGGTTCGAGTCCAGTCAGGC\n+CCACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACGTGTTATGG\n+GGCGATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGGGGTCGGCG\n+GTTCGATCCCGTCATCGCTCCACCATCTCTGTAGTGATTAAATAAAAAAT\n+ACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAA\n+ATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTG\n+AGTCTCTCAAATTTTCGCAAC\n+>rnd-1_family-3#Unknown ( RepeatScout Family Size = 34, Final Multiple Alignment Size = 34, Localized to 1 out of 1 contigs )\n+CAGTAAGCGNNCAGCGAGAACCGTATTGACGGGGATGTGTTACTGAGCAG\n+CTCAGNGCNACGCGCCAGGGCAGCAGNTCGCNNACCCGGTTTGCCGGCCA\n+GTCCTGGCTATGACGTCAAGGACGTAGCGNAGGCAGCTTTCTGGCTCCAC\n+NTCGTTCAGTTTGCACGTNCCGATCAGGCTGTACAGCAGCGCCGCNCGCT\n+CACCACCGCGGTCGGAACCGAAGAACAGGCAGTTTTTNCGGCCCAGACGG\n+CCACTCCCCGCAAGGCGTTCTCNGCGATGTTGTTGTCGATTTCCGCCCAG\n+CCATCACTGCATAGTACGCGTTCAGCGCNNNCCACTGNTTCAGCGCGTAT\n+GCGAACGCTTTCGCCGTATCTGAGTGNCGCGACAGGGTTTTCATCTTTTC\n+ACGCANCCAGCCNTCCAGGGACTTCANCAGTGGCGCGGCTTCGGCTTTTC\n+GCTGACGTTCGGCAAGGCGCTGCTCCGCCGNACATTCCCCTTATCTCTGC\n+CTCGATGGCGTACAGTTCGCCGATCCGCTNCAGGGCTTCCGTCGGTGACG\n+TGGGTGGGCGNTCTTACGTGCACATCGTGGATTTTTCGGCGGGCGTGAGC\n+CCAACAGGCGGCTTCCGTTATCCCGCCGGATTCGTATAACGCCCGTTGAA\n+CCCGGCGTANGCATCCGCCTGCAGCACACCGCTGNANCCGGCAAGGTGAG\n+TCTGCGGATGGATGCCTTTCCTGTCCGGGCTGTAAGCGAACCACACCGCC\n+GGNGCCANCGNTGACCCGGCGTTACGGTCGTCACGGACGTAGGCCCACAG\n+CCGCCCGGTCCGCGTTTTCCCGCTGCCCGGCANCAGNACCGGGACGGGGG\n+TATCATCAGCATGGAGTTTACCGGGCATCAGCACATACTGGC'..b'ATGGCATTCGGTACAGAGCGTCCAGAGATTCGTCTCCT\n+CATTACCACCACCGAACTGAAGTGCAATTCGGTGATCGAGTTCACTGTCA\n+CAGAGGTCAACCACACGACCACAGAGACAGCACTGCCCGGCATCCCTGAG\n+CCAGATATGACGCTTGAGGGAAACACGTGCACTGCCACTGACACGACGCT\n+GTTCACCCTTCAGAATATTCACCCGTCGGGTATTCAGTGTTTTGATTCTG\n+CCCGGTAACGTACGAAGCACAGCCATGTAAAATCCTCGCCATATAGCTTG\n+TCACCAGAGGAAAGAAAATGTCANCGAAGAACAGGACCCGCAGAACAACA\n+ACCCGCAACATCCGCTTTCCNAACCANATGATTGAACAAATTAACATCGC\n+TCTTGAGCANAAAGGGTCCGGGAATTTCTCAGCGTGGGTCATTGAAGCCT\n+GCAG\n+>rnd-1_family-25#Unknown ( RepeatScout Family Size = 16, Final Multiple Alignment Size = 16, Localized to 1 out of 1 contigs )\n+AGTAAATATCAGTATGCTCTCTCTCATGCTTAGCGCCGCTGAATGCCACC\n+GCCGGAATAACAATCTGCCGGTCAAACGGCTGATCGTCATAAACCCTGAC\n+GGTAATGGTCCCTGATGGCCACCGCTCCGGTGCACGGGAGTCCCGGGGGA\n+AAGCTTTGCCCACTGTTTTAACGAGATCGCCTTCAATCTGGTTCGCGGAC\n+AGTTTTCCCNGAACCCGACAGTTCTCGTTAATCGTGACGTTGTTGAGCGT\n+CCCGGAGTTCGCATTCACGCTACCGCTGATATCCGCATTTTTAGCGGTCA\n+GCTTTCCGTCCGGCGTCAGGGAAAACGCCGGAGGATTGCCGCCGCTGGTA\n+ATGGTGGGGGCCGTCAGGCGCTTCAGGAACACGTCGTTCATGAATATCTG\n+ATTGCCCTGCGCCACAAACATCGGCGTTNCGTTGCCGTTCGCCGGGTTAA\n+TCATCGCGATACGGTCAGCCGCCAGCAGNANCTGGCTCGCTGCCTTCCTG\n+CTGGCCCGTGTCCTCAATNCCGGCGCCAATACCCGCGACATAAGGCGTGC\n+CGTCTTTCGTCTGCTGCANCTTCGACGGCCCACATGCCGTTCAGGTTATC\n+GTTTGCGTCCTTCTGCACGCGCTGTATCTGCTGNATGGCGGCGCTCTGGT\n+CCTCCAGCGTTTTACTGACCGTCTGCGTGATTTCATTGCGGGCNTCCGTG\n+ATGGNGGTCCTCATCTCCGCCATCTCATCCGCAAGCTGGCCGTTATCNAT\n+CAGCGTCCAGCAGCTCCTGAGCCAGATGGGTTTTCCCTATCTCGCCTTTG\n+AAAAAATCCAGATANCCTTCCGCATCATCGCTCGCCCGNCCGACGGCCTC\n+CACGAACGCCGATTTGCCAACCGTGTTCACGCTGCGGACGTAAAAGTAAT\n+AATCATGGCCCGGCTTGATATTGATACTGGCCGGCTACCTCCAGTGACAG\n+CCCCGTGCCAAGATAGCGGGCTGNGGTTTCAACCTGCCTGATATGCGGCA\n+ATCCGCGTTTCCGAGAACCAGAACTCAAACTGTACCGTCGGGTCATAAAC\n+GGCAAGACGCGGCGCGGCGGTTATCTGAAAATAGCCCGGCGTCAGCTCAA\n+TCCGCGACGGGTGCTGCCGGTGCGGCAATCCGGAACGATGCCGGCGGCCG\n+GNTCGCCCTGCTGCCCCCACGCGTTTACCGCCCGGACTGTCAGCCTGTAG\n+TTCCCCGAGCGCCAGACCGCGTGAAGCGGTGCGCGGTNTCCGCCGTCCGG\n+GCCGTGCTGACCAGCCGCTCGCTGCCGTCGTCCGCTGCCGCTGGTCAGNC\n+GNAGCATGAAGCTCACGCCCTTCACCACCCGCGGCGTGTCCCATCGCGCC\n+NGCGCCNGATACTGNCCGCCGGCTGCGCTCACCTCCGCCGTCAGGTGCTG\n+CACTGCCGGCGGGATGACGCCGTTCAGGGTGCCTGACTGCGGCTCAAAGC\n+TGGCCCCGTTATCCACGATGGCTTCTTTTTCCGGTACGTGCTGCACCGCC\n+GTGATGGCAAAGGTGCCGTCCGTGTTTTCCCGGATGGAGACACAGCGGAA\n+CAGGCGACGACGCAGTGACGGCAGGGAGAGTCCCCACACACCGTATGTCG\n+CCACGCCATCAGGCAGGGTACTGACCTGTATCCGGTCCGGCGCGGGGTGT\n+GCGGTGATGTCCACGCTCACCGGCTTACCGCTGCCGTTAATCAGGTTCAC\n+CGTCGNTGTACCTGTCTCCGGCAGCGTCACCTCACGGTCCAGCGTCAGGG\n+TGCGGCTGGCGGCATCGATGGACAGGACACGTCCGCCGGTCATGGTCCCG\n+GCATAGTCGTTATCACAGATTTCAATAACGTCGCCGGGTGCGTGNCGCAG\n+CCCCTGTGACCCGAGCGTGAAATCCACCGTCTGCGTTTCCAGCAGTCCGG\n+TCTTTATCACCCACAGCCCGGCACGGTGGGCCTGACCGCGACTGGTGCAG\n+CCGAACGCATCCATCTTCAGCAGGTTGCGCCCGTAGCGCAGTATGGCTTC\n+CGGGTCTTCCACCAGTTCCGTGGAGGTCTGCCAGCCGTTCTGCGGGTCGG\n+TGTAATTCACCTCCACCGCCGTGTGGCGGTCCTTCAGGGCGCTGAAGCTG\n+TAGCGGAACCCCACGCCGTTATCATCCACCACCACATCGCTGTTGGTGTA\n+CGGCCACACCACATCCGACGGGCGGTCCTGAACGAACGTCAGCGTCTGGC\n+CGTTCCATACCGGCATACAGCGCATCGCCGAGCAGAAATCACTGAGAACG\n+TCCCACGCCTTACGCTGTTGTGACAGGTACGCATTAAAGGTCATCCGCGG\n+CTCCGTGCCCCCGAAGCCGTCCGGGACCGTCTGGTCGCAGTACTGCGCGA\n+TGGCATACAGCGCCCATTTGTCCACGTCCGCCGCCCCCAGACGTTTTCCC\n+ATGCCGTAGCGCGGGTGAGTCAGCATGTCCCACAGGCACCAGGCCGGGTT\n+GTTGCTGTATGCCGGTTTCAGGCTGCCGTCCCAGATGCCGCTGTACGTGC\n+GTTTTTCCGGGTCATAGTTTGACGGCACCTGGATGATGCGACCGCGGATA\n+TGGTAGTTCACCGTCATCTGCTGGCCGCCGAACTGCTCCGCATCCACCTG\n+CAGCCCCACAATCGCCGTGTTCGGGTAGCACTGTTTCACATCGATGATTT\n+CGGTGTATGACGACCACAGCGTCTTGTTCTGCAGCTGGTCCGTGGTGCTG\n+TCCGCCGTCTCCCTGACCATCCGGATGTTAAAGGGGCGGGGAGGCAGATT\n+ATCCAGAATCACCGAGGCCAGGAACTGCGAGGTGGTCTTGCCGTTAATGG\n+TGACGTCCTTTTCCGTCACCCAGTTACCGTTACGCTGCAGCTGAATCAGC\n+AGGCGGACGGATGCCGGGTTACGGTCACCCTTTGAGGTGGTCTCCACCAG\n+TGACTGCACCCCGAAGGTGACCCGCAGGCGGTCAATGTTCGCGGACGTAA\n+TGGTGCGCGTCACCGGCTTTGCCTTCGTCACTTCCACGCCCAGCGCGGTT\n+TCGGAGCCGGAGGACTCAAAACCTTCCGGCGGTGTCTGCTCCTGCTCCCC\n+GGCGCGCCAGACCGCCGTCACACCGTGTATCACGGGATTACCGTCCGTGT\n+CCGTCAGCGGGGTTTTGTTCACCAGAATACTCTGCAGCCCCTTCACCGGA\n+CCTTCAATCGGCCCTTCACCAATGGCGTCAATCACGCTCATCATCTGCGT\n+GGACTTAAGATTGTCCTTCGCCTCTACCGGCGTGTGCGCCTTGCCGCCAC\n+CTTTACCCATTCTGTCCCCCTCTCCTGT\n' |
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| diff -r 000000000000 -r 4f0c878b36d4 test-data/eco.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/eco.fasta Tue Nov 24 04:14:46 2020 +0000 |
| b |
| b'@@ -0,0 +1,84902 @@\n+>CP027599.1 Escherichia coli strain 97-3250 chromosome, complete genome\n+ATCCCGGCCCCGGCAGAACCGACCTATCGTTCTAACGTAAACGTCAAACACACGTTTGATAACTTCGTTG\n+AAGGTAAATCTAACCAACTGGCGCGCGCGGCGGCTCGCCAGGTGGCGGATAACCCTGGCGGTGCCTATAA\n+CCCGTTGTTCCTTTATGGCGGCACGGGTCTGGGTAAAACTCACCTGCTGCATGCGGTGGGTAACGGCATT\n+ATGGCGCGCAAGCCGAATGCCAAAGTGGTTTATATGCACTCCGAGCGCTTTGTTCAGGACATGGTTAAAG\n+CCCTGCAAAACAACGCGATCGAAGAGTTTAAACGCTACTACCGTTCCGTAGATGCACTGCTGATCGACGA\n+TATTCAGTTTTTTGCTAATAAAGAACGATCTCAGGAAGAGTTTTTCCATACCTTCAACGCCCTGCTGGAA\n+GGTAATCAACAGATCATTCTCACCTCGGATCGCTATCCGAAAGAGATCAACGGCGTTGAGGATCGTTTGA\n+AATCCCGCTTCGGTTGGGGACTGACTGTGGCAATCGAACCGCCAGAGCTGGAAACCCGTGTGGCGATCCT\n+GATGAAAAAGGCCGACGAAAACGACATTCGTTTGCCGGGCGAAGTGGCGTTCTTTATCGCCAAGCGTCTA\n+CGATCTAACGTACGTGAGCTGGAAGGGGCGCTGAACCGCGTCATTGCCAATGCCAACTTTACCGGACGGG\n+CGATCACCATCGACTTCGTGCGTGAGGCGCTGCGCGACTTGCTGGCATTGCAGGAAAAACTGGTCACCAT\n+CGACAATATTCAGAAGACGGTGGCGGAGTACTACAAGATCAAAGTCGCGGATCTCCTTTCCAAGCGTCGA\n+TCCCGCTCGGTGGCGCGTCCGCGCCAGATGGCGATGGCGCTGGCGAAAGAGCTGACTAACCACAGTCTGC\n+CGGAGATTGGCGATGCGTTTGGTGGTCGTGACCACACGACGGTGCTTCATGCCTGCCGTAAGATCGAGCA\n+GTTGCGTGAAGAGAGCCACGATATCAAAGAAGATTTTTCAAATTTAATCAGAACATTGTCATCGTAAACC\n+TATGAAATTTACCGTAGAACGTGAGCATTTATTAAAACCGCTACAACAGGTGAGCGGTCCGTTAGGTGGT\n+CGTCCTACGCTACCGATTCTCGGTAATCTGCTGTTACAGGTTGCTGACGGTACGTTGTCGCTGACCGGTA\n+CTGATCTCGAGATGGAAATGGTGGCACGTGTTGCGCTGGTTCAGCCACACGAGCCAGGAGCGACGACCGT\n+TCCGGCGCGCAAATTCTTTGATATCTGCCGTGGTCTGCCTGAAGGCGCGGAAATTGCCGTGCAGCTGGAA\n+GGTGAACGGATGCTGGTACGCTCCGGGCGTAGCCGTTTTTCGCTGTCTACCCTGCCAGCGGCGGATTTCC\n+CGAACCTCGATGACTGGCAGAGTGAAGTCGAATTTACCCTGCCGCAGGCAACGATGAAGCGTCTGATTGA\n+AGCGACCCAGTTTTCGATGGCGCATCAGGACGTTCGCTATTACTTAAATGGTATGCTGTTTGAAACCGAA\n+GGTGAAGAACTGCGCACCGTGGCAACCGACGGCCACCGTCTGGCGGTCTGTTCAATGCCAATTGGTCAAT\n+CTTTGCCAAGCCATTCGGTGATCGTACCGCGTAAAGGCGTGATTGAACTGATGCGTATGCTCGACGGCGG\n+CGACAATCCGCTGCGCGTGCAGATTGGCAGCAACAATATTCGCGCCCACGTTGGCGACTTTATCTTCACC\n+TCCAAACTGGTGGATGGTCGCTTCCCGGATTACCGCCGCGTTCTGCCGAAGAATCCGGACAAACATCTGG\n+AAGCTGGCTGCGATCTGCTCAAGCAGGCGTTTGCCCGTGCGGCAATTCTCTCTAACGAGAAATTCCGCGG\n+CGTGCGCCTGTATGTCAGCGAAAACCAGCTGAAAATCACCGCCAACAACCCGGAACAGGAAGAAGCGGAA\n+GAGATCCTCGACGTTACCTATAGCGGTGCGGAGATGGAAATCGGCTTCAACGTCAGCTATGTGCTGGATG\n+TTCTGAACGCGCTGAAATGCGAAAACGTCCGCATGATGCTGACCGATTCGGTTTCCAGCGTGCAGATTGA\n+AGATGCCGCATCACAGTCGGCTGCCTATGTTGTCATGCCAATGAGACTGTAATGTCCCTCACCCGCTTGT\n+TGATCCGCGATTTCCGCAACATTGAAACCGCGGATCTCGCTTTATCTCCCGGCTTTAACTTTCTGGTAGG\n+TGCCAACGGCAGTGGCAAAACCAGCGTGCTGGAAGCCATCTATACGCTCGGCCATGGTCGGGCGTTTCGC\n+AGTTTGCAGATTGGTCGCGTCATTCGCCATGAGCAGGAGGCATTTGTTCTCCATGGGCGATTACAGGGCG\n+AAGAGCGCGAGACGGCGATTGGCTTAACCAAGGACAAACAGGGCGACAGCAAAGTCCGCATCGACGGTAC\n+TGACGGGCATAAAGTCGCGGAACTGGCGCACCTGATGCCAATGCAGCTGATAACGCCAGAAGGGTTTACT\n+TTACTCAACGGCGGCCCCAAATACAGAAGAGCATTCCTCGACTGGGGATGCTTTCACAACGAACCCGGAT\n+TTTTCACCGCCTGGAGCAATCTCAAGCGATTGCTCAAGCAGCGCAATGCGGCGCTGCGCCAGGTGACACG\n+TTACGAACAGCTACGCCCGTGGGATAAAGAACTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCG\n+GAGTATAGCGCCGGTATCGCGGCCGATATGGCCGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGA\n+CTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACG\n+CGATCGCCAGCTAACCTACACCGCGCATGGCCCGCATAAAGCGGACTTACGCATTCGCGCCGACGGTGCG\n+CCGGTGGAAGATACCTTATCGCGTGGGCAGCTTAAGCTGTTGATGTGCGCCTTACGTCTGGCGCAAGGAG\n+AGTTCCTCACCCGTGAAAGCGGGCGGCGGTGTCTCTACCTGATAGATGATTTTGCCTCTGAGCTTGATGA\n+TGAGCGTCGTGGGTTGCTTGCCAGCCGCTTAAAAGCGACGCAATCACAGGTCTTTGTCAGCGCGATCAGT\n+GCTGAACACGTTATAGACATGTCGGACGAAAATTCGAAGATGTTTACCGTGGAAAAGGGTAAAATAACGG\n+ATTAACCCAAGTATAAATGAGCGAGAAACGTTGATGTCGAATTCTTATGACTCCTCCAGTATCAAAGTCC\n+TGAAAGGGCTGGATGCGGTGCGTAAGCGCCCGGGTATGTATATCGGCGACACGGATGACGGCACCGGTCT\n+GCACCACATGGTATTCGAGGTGGTAGATAACGCTATCGACGAAGCGCTCGCGGGTCACTGTAAAGAAATT\n+ATCGTCACCATTCACGCCGACAACTCTGTCTCTGTACAGGATGACGGGCGCGGCATTCCGACCGGTATTC\n+ACCCGGAAGAGGGCGTATCGGCGGCGGAAGTGATCATGACCGTTCTGCACGCAGGCGGTAAATTCGACGA\n+TAACTCCTATAAAGTGTCCGGCGGTCTGCACGGCGTTGGTGTTTCGGTAGTAAACGCCCTGTCGCAAAAA\n+CTGGAGCTGGTTATCCAGCGCGAGGGTAAAATTCACCGTCAGATCTACGAACACGGTGTACCGCAGGCCC\n+CGCTGGCGGTTACCGGCGAGACTGAAAAAACCGGCACCATGGTGCGTTTCTGGCCTAGCCTCGAAACTTT\n+CACCAATGTGACCGAGT'..b'GCCGAACGGGCCGCCTGTTCCGAGCTGGCGTCGATAAGATCGGCAATCGCCTCAGCCTGGGCTAAGT\n+CGAGTTTATCGTAAAGAAACGCGCGTTCGGAAAACTCACCAGGGCGAGCAATCCGCAGGCCGGGAATGGT\n+CAGAATGCGTTTTAACAGCAGGTCGAGGATCACCGGACCGCCATGACCCTGCAGTTCAAGCACATCTTCG\n+CCGGTGAACGAGTTCGGGCCAGGGAACCATAGCGCAATCCCCTGATCGAGCACGCTGCCGTCGGCGTCTT\n+TAAATGGCAAATAATCGGCGTAGCGCGGCTTAGGTAGTTTACCCAGCACGGTTTCGGCAACTTCACGGGC\n+TTTGAGGCCGGAGATGCGCAGGATGCCAACACCGCCACGTCCCGGAGGCGTGGCCTGGGCTACGATAGTG\n+TCATTATCGCTCATGATGTTCCTGTTGCTTTGTGTGGCGGATGCGCGGTGCTTATCCGCCCTACGAAAAG\n+AAAAAAGGCGGTCAACTGACCGCCCTTATTTTAGCGAAAACTCACCGAATCAGGATTTTTTCTTCTCGCG\n+GCTATGCAGGCCACGTTTTTCCAGACCACGGTAAATCAGCTGCTGCTGAATAATGGTTACCAGGTTGCTG\n+ACGATATAGTACAGCACCAGACCTGACGGGAACCACAGGAAGAACACGGTGAAGATGACCGGCATAAAGG\n+TCATGATCTTCTGCTGCATCGGGTCGGTCACTGTGGTCGGCGACATCTTCTGAATGAAGAACATCGTTAC\n+GCCCATCAGGATCGGCAGGATGTAGTACGGGTCCTGTGCCGACAGGTCGTGGATCCACAGTGCAAACGGT\n+GCCTGACGCAGTTCAACGGAACCCATCAGCATGTAGTACAACGCCAGGAAGATTGGCATCTGGATCAGCA\n+GCGGGAAGCAGCCGCCCAGCGGGTTAACCTTCTCAGCTTTGTACAGCGCCATCATTTCCTGGCTGATACG\n+CTGTTTGTCATCGCCCAGACGCTCACGCATTGCCTGAATCTTCGGCTGCAGCATACGCATCTTCGCCATG\n+GAGGTGTACTGCGCTTTGGTCAGCGGGTACATGATGCCACGAACGATAAAGGTGATGATGATAATGGAGA\n+AGCCCCAGTTACCCACAAAGCTATGGATCCATTTCAGCAGTTTGAACAGCGGCTGAGAGATGAACCACAA\n+CCAACCGTAATCAACGGTCAGATCCAGGTGCGGAGCAACAGCTGCCATTTTGTCCTGGATTTCCGGGCCA\n+ACCCACAGGGTGCTGTTCATCGCGCCAGTCTGACCAGGCTGAACCAGTACCGGCTGAGATTTATAGCCGA\n+TAGCGGCGATGCCGTTACCCAGATTAGCGGTATAGAAGTTGTTGGTACCGTCGTTATGCGGGATCCACGC\n+CGTCGCGAAATACTGTTGCAGCATCGCCACCCAACCACCTTTCGAAGAGATGTTCAGGTTTTCGTTATCG\n+GCAATGGTATCGAACTTGTATTTCTCATACTTCTCGTCAGGCGTGGAGTACGCCGCGCCACGGAAGGTGT\n+GCAGTGCGAAGTTGCTGCTTCCGGTATCGAGATGCGGTGGCAGAGTGATGGATTGCTTCAACTGACCAAA\n+GGTGGAGATTTCCAGCGGTTTCTCGCCAGCGTTCTGCACGTTGTAGTTGACGTTGACAGCGTAATCACCA\n+CGTTTCAGGACAAACGTTTTGGTAAACGTGTTGCCTGCCGCGTCGGTATACGTCATCGGCACCTGCAGTT\n+CGTTTTGACCTTCAGCCAGCACATAAGCGTCTTTTTCAACGTTATACAGCGGACGCGGGCCGTTAGCCGG\n+GTTATCCGGGCCATCACGACCGGTCAGACCGCTCTGTGCCTGATAAATAAACTGCGGTGAAGTTTCCAGC\n+AGCTGGAACGGCTGGGTAGAGTTCAGCTCTTTCGGGTAAGCAGGCAGCAGAGCTTGCTCAACATCACCAC\n+CACGGGTGTTGATGGTCAGATCAAGCACGTCGGTCTTAACCGAGATCAGTTTCCCCTGGCCACTGGCCGG\n+TACGCCCTGGTCGGCGGCGCTACCCGCTGCGGTGGTCGTTGTCTGCGTGGTCTGTTGGGCCTGAGGTTGC\n+GGGTTTTTATCCTGCTCCCAGGCTTGCCAGATCATGAAAGACACGAACAGCAAAGCGATGACTAAAAGAT\n+TGCGTTGCGAATCCATCGTTAGTGTTCTCTGGTATCAAATGGTCCGGGCGGGACGGGATCGTCACCACCA\n+GGGTGTAAAGGGTGGCATTTTAATACGCGTTTCACCGTCAACCAACTGCCTTTTATCACTCCAAACCTGC\n+GCAATGCCTCAATTCCGTAGCTTGAACAGGTTGGAGTGAAACGACAATGCGGCCCGAGTAGCGGACTAAT\n+CAGGCGTTGATAGACCCGAATGAGGGCTATCAGGACCCGCGAGCCAGGCGACAGTGGCGGCGCCATAATT\n+TTTCCAACGCTTCCGAGAGAGCACGGTTATCGAGGTCGGCAACCCCTTTTTTCGCCACCACCACGAAATC\n+CATAGCCGGGAGTTCATGTTGGCGCAGACGGAAGCTTTCACGCGTCAGACGTTTAATCCGATTGCGTTCA\n+TGGGCGCGTCGAACGTTTTTCTTGGCGACTGTAAGACCGATACGGGGATGCCCCAGCGAATTCAGGCGGC\n+CGAGAATGGTAATTTGCGGCGTGCCAGCCCGTTGTGGCTGCTGGAAGACGAATGTGAATTGACTGGGAGT\n+TAACAAGCGTAACTCCCTGGGAAATGCGAGCTTAACCACTCAGGGGTTAGCTTTATTACTTAGAAACGGT\n+CAGACGAGCGCGGCCTTTAGCACGACGACGTGCCAGAACCTGACGACCATTTTTAGTAGCCATACGAGCA\n+CGGAAGCCGTGAGAACGGTTGCGCTTCAGTACAGACGGTTGAAAAGTGCGTTTCATGGCGATTTCTACCT\n+AAACTTGAATAAATTCAATGGCTTTATTGGATATCCGCCGAAAAATGAAACGATGGACACCGAAGCCATG\n+GGTGATTAAAGAGGCCGGATTGTAATAATTGTACACTCCGGAGTCAATTCTCTTTCCTTATTTACCGCGC\n+TTTTCCGCACCTTTTCGCAGGGAAAATGTACGACCTCACACCAGTGAAAACCAGCATGGCGCGCCGGGTG\n+GAGGATTATACGGGCTGATGGGTAAAGCGCAAGGATCGTCCTGGATCTTTATTAGATCGATTAAGCCAAT\n+TTTTGTCTATGGTCATTAAATTTTCCAATATGCGGCGTAAATCGTGCCCGCCTCGCGGCAGGATCGTTTA\n+CACTTAGCGAGGTCTGGAAAGTCCTGTGGATAAATCGGGAAAATCTGTGAGAAACAGAAGATCTCTTGCG\n+CAGTTTAGGCTATGATCCGCGGTCCCGATCGTTTTGCAGGATCTTGATCGGGCATATAACCGCAGACAGC\n+GGTTCGTGCGTCACCCTCAAGCAGGGTCTTTTCGACGTACGTCAACAATCATGAATGTTTCAGCCTTAGT\n+CATTATCGACTTTTGTTCGAGTGGAGTCCGCCGTGTCACTTTCGCTTTGGCAGCAGTGTCTTGCCCGATT\n+GCAGGATGAGTTACCAGCCACAGAATTCAGTATGTGGATACGCCCATTGCAGGCGGAACTGAGCGATAAC\n+ACGCTGGCCCTGTACGCGCCAAACCGTTTTGTCCTCGATTGGGTACGGGACAAGTACCTTAATAATATCA\n+ATGGACTGCTAACCAGTTTCTGCGGAGCGGATGCCCCACAGCTGCGTTTTGAAGTCGGCACCAAACCGGT\n+GACGCAAACGCCACAAGCGGCAGTGACGAGCAACGTCGCGGCCCCTGCACAGGTGGCGCAAACGCAGCCG\n+CAACGTGCTGCGCCTTCTACGCGCTCAGGTTGGGATAAC\n+\n' |