| Previous changeset 57:677d224656e0 (2016-08-27) Next changeset 59:5ad68d3a11cc (2016-08-27) |
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Commit message:
Uploaded |
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modified:
Protein_report_processing.py |
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| diff -r 677d224656e0 -r 4f843e0c6c40 Protein_report_processing.py --- a/Protein_report_processing.py Sat Aug 27 21:03:24 2016 -0400 +++ b/Protein_report_processing.py Sat Aug 27 21:03:57 2016 -0400 |
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| @@ -91,6 +91,7 @@ db_len = len(data_lines) seqlength = 0 count = 0 + last_line = data_lines[-1] for data_line in data_lines: if ">sp" in data_line: namer = data_line.split("|")[2] @@ -105,6 +106,8 @@ while ">sp" not in data_lines[match]: if match <= db_len: seqlength = seqlength + len(data_lines[match].strip()) + if data_lines[match] == last_line: + break match = match + 1 else: break @@ -121,6 +124,8 @@ while ">sp" not in data_lines[match]: if match <= db_len: seqlength = seqlength + len(data_lines[match].strip()) + if data_lines[match] == last_line: + break match = match + 1 else: break |