| Next changeset 1:4fafff628c81 (2023-01-13) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 |
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qiime2__feature_classifier__find_consensus_annotation.xml test-data/.gitkeep |
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| diff -r 000000000000 -r 501989cbaea1 qiime2__feature_classifier__find_consensus_annotation.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__feature_classifier__find_consensus_annotation.xml Mon Aug 29 19:50:07 2022 +0000 |
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| @@ -0,0 +1,73 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2022, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2022.8.1) +for: + qiime2 (version: 2022.8.1) +--> +<tool name="qiime2 feature-classifier find-consensus-annotation" id="qiime2__feature_classifier__find_consensus_annotation" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> + <description>Find consensus among multiple annotations.</description> + <requirements> + <container type="docker">quay.io/qiime2/core:2022.8</container> + </requirements> + <version_command>q2galaxy version feature_classifier</version_command> + <command detect_errors="aggressive">q2galaxy run feature_classifier find_consensus_annotation '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="paths"/> + </configfiles> + <inputs> + <param name="search_results" type="data" format="qza" label="search_results: FeatureData[BLAST6]" help="[required] Search results in BLAST6 output format"> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureData[BLAST6]"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[BLAST6]']</validator> + </param> + <param name="reference_taxonomy" type="data" format="qza" label="reference_taxonomy: FeatureData[Taxonomy]" help="[required] reference taxonomy labels."> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureData[Taxonomy]"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Taxonomy]']</validator> + </param> + <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> + <param name="min_consensus" type="float" min="0.500001" max="1.0" value="0.51" label="min_consensus: Float % Range(0.5, 1.0, inclusive_start=False, inclusive_end=True)" help="[default: 0.51] Minimum fraction of assignments must match top hit to be accepted as consensus assignment."/> + <param name="unassignable_label" type="text" value="Unassigned" label="unassignable_label: Str" help="[default: 'Unassigned'] Annotation given when no consensus is found."> + <sanitizer> + <valid initial="string.printable"/> + </sanitizer> + </param> + </section> + </inputs> + <outputs> + <data name="consensus_taxonomy" format="qza" label="${tool.name} on ${on_string}: consensus_taxonomy.qza" from_work_dir="consensus_taxonomy.qza"/> + </outputs> + <tests/> + <help> +QIIME 2: feature-classifier find-consensus-annotation +===================================================== +Find consensus among multiple annotations. + + +Outputs: +-------- +:consensus_taxonomy.qza: Consensus taxonomy and scores. + +| + +Description: +------------ +Find consensus annotation for each query searched against a reference database, by finding the least common ancestor among one or more semicolon-delimited hierarchical annotations. Note that the annotation hierarchy is assumed to have an even number of ranks. + + +| + +</help> + <citations> + <citation type="doi">10.1186/s40168-018-0470-z</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool> |