Repository 'saint_preprocessing'
hg clone https://toolshed.g2.bx.psu.edu/repos/bornea/saint_preprocessing

Changeset 73:50391fdc229a (2016-08-27)
Previous changeset 72:5ec0b997fb13 (2016-08-27) Next changeset 74:47aa4f551c53 (2016-08-27)
Commit message:
Uploaded
modified:
mzID_process2.py
b
diff -r 5ec0b997fb13 -r 50391fdc229a mzID_process2.py
--- a/mzID_process2.py Sat Aug 27 23:26:10 2016 -0400
+++ b/mzID_process2.py Sat Aug 27 23:37:08 2016 -0400
[
@@ -184,14 +184,12 @@
  os.system(cmd)
  mzIdentML = read_tab("flat_mzIdentML.txt")
  inter = inter + make_inter(mzIdentML,bait[cnt][0],bait[cnt][1]).inter
- print inter
  accessions.append(make_inter(mzIdentML,bait[cnt][0],bait[cnt][1]).accessions)
- print accessions
  cnt+=1
 
 with open("inter.txt","w") as x:
  x.write(inter)
-if make_prey == "Y":
+if make_prey == "true":
  unique_accessions = []
  prey = ""
  for i in accessions: