| Previous changeset 1:13c8e1ce0a15 (2017-11-24) Next changeset 3:74878f127e47 (2020-01-22) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit b24ba669c32dd33efcc60eee595a18abd639ca7a |
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modified:
lordec.xml test-data/lordec/corrected_reads.fa test-data/lordec/trimmed_reads.fa |
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| diff -r 13c8e1ce0a15 -r 51ffe0318eea lordec.xml --- a/lordec.xml Fri Nov 24 12:47:46 2017 -0500 +++ b/lordec.xml Wed Sep 05 09:03:30 2018 -0400 |
| [ |
| @@ -1,11 +1,11 @@ <?xml version='1.0' encoding='utf-8'?> -<tool profile="16.04" id="lordec" name="Lordec" version="0.6"> +<tool profile="16.04" id="lordec" name="Lordec" version="0.9"> <description>is a set a programs for correcting sequencing errors in PacBio reads</description> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.6">lordec</requirement> + <requirement type="package" version="0.9">lordec</requirement> </requirements> <command><![CDATA[ |
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| diff -r 13c8e1ce0a15 -r 51ffe0318eea test-data/lordec/corrected_reads.fa --- a/test-data/lordec/corrected_reads.fa Fri Nov 24 12:47:46 2017 -0500 +++ b/test-data/lordec/corrected_reads.fa Wed Sep 05 09:03:30 2018 -0400 |
| b |
| b'@@ -1,2025 +1,50 @@\n >m120131_103014_sidney_c100278822550000001523007907041295_s1_p0/10002\n-gacaatcactaacacgccagcaaataacgccgggaaaagcgcaattcgtttactcacgctttacctccga\n-tggcgttatccagaaatgcgcacaaagtgcattgccggagcgtcgcaccataaataccagactgcaggta\n-cgcgctggaaagcgtcccggcgcggacaatacggcatggcctgccacagcggcgttgccattagcgcatc\n-cattgtctttggctgttgtcgtgatcaaacagagcacatccaacggtcctttatatcgccgccagacgaa\n-tcgatactgacgcggtactgcccagaagttggtttccccttgcccagcatttgggatgccgtaccatcaa\n-gaatttctggaacaagctgtttggacgaagaccagcatatgcgcggatcgataagtcggtcgtcagcaaa\n-ttaacggacgcgcaccacgccttccaagcggggtttcaatgctgcggataaagtcttcatatttgcgcta\n-aatgcgtttccgctgcgctttgcaggtttaagtaaatcctgccagtttccgtcagcgaatttacgcgcca\n-tcgccaacggctgtttgtacgtcactgaagttaaatccgcgacccggcgcaatacgagccagcatttctg\n-gttgaaggccatatcctgcgaccagaccataaacgatgtttcagattcggtcagcagtttcaaggttagg\n-tctgtgcgcaaaccgacgtcgatcactgaggtcccggccaatggggttcgctgacccacagcgatattgt\n-tgtgtatccgccacgccgtaaggccacgatgccgagcgccagcagtaatttccaccggcaaccatctcca\n-gcgccacaatacataattgggattcaatagccgccgcgtgggcggtaattcatctgccataacaatcgag\n-aaaggccatcgcccgttaacaggtcggacggcgcgaataagaaggataagccgtcatcaataaacaaaac\n-tcacaggtgcagcaccacgcccggatgcggtcaaaatacccatgcgggatgcataaatcatttccgaggg\n-ttttcgtgtcgccgcgcataattttccgcaggccggttcctgagcatcatttcagccgcgcagggcgaca\n-gataatcacagtagcgtgccgccatattgatatcgtgcaacaggcaatgaccgtcaggccacgctcctga\n-cttaaacggtgcaccagcgacagcaacatcaacctgtgggcgatatccagcgccgaggtcggttcgtcga\n-gcaatcagatcaacggctattcctgcgcccaccagctggcgaatcccgcccgctgacgttcgccgcagag\n-agactatgaccagccgatgcgccaagcggtttagccaaaccagcgagatagctacctcgactttttcgcc\n-gatctgccgccccaaagcgccccagcgcgccatgccacgggtaagacgaccatcgccaccagttccacgc\n-cacggtcatcccttcgccggaggaagctgctgcggcaataaagccactttgcgggcaaacgcttgcgctc\n-cagctttcccagcggttgggcatcaagaagtaatcttcccctccgacggcggctgatgacgggccaagca\n-ttttgagcagagtggatttaccagaaccgttgtgaccaaatcagaccggtcactttcccggcaggaaagg\n-tttaactgacagcggatgcaaagcgtgcgccgggcacacgaaaggagatatagcggcagtgcaaaagtgg\n-tatcgaatgattcgtgtatctcctgcataacagccaaacttgtgaaatgggcaggaaatccggccccaat\n-aagagaaaattagaaacggaaggttgcgggttgcaacagacctgacttctgcgccccagaagcagccata\n-aagtgttaaagcaggctgccgacgtattcacgatcgatacggtttgttaacatgcagcggccagcgttgg\n-agccagccatgccgactcgcgccagatcatatacgtactaaccagcatccacgaccgtatatactcccca\n-ctttaaaggaagttagccgatcaccgcataactggagccagtatacaacgaccaccgtggcccagcccgt\n-cagatcctgaaggcgagcgggcgtcaaagaaggtgtagtcagacccacaactgaagccatgtgttttggc\n-acctgtgcatggcgtattgcctttattacggtgtatcggtggtgtattccggatcggtgtaagtaataag\n-aacctgactacgttaacactcgccgacagcgccgctttcggctgctgatttctacgcacgtgcgcggatc\n-tcgatccacctttcaacgagaagtaagtggaccgctcagggtcgcgccatcaggtttgttggttttagtg\n-agattatacaacggccacgcagtaactacaatcggacgatcttccggtactatatttcacgccgacttca\n-tactgcttaccttttagacggtggcgaaaatattaaccatccctccctgaacttgcgaaaaggttcataa\n-cgattcgcttatagctgaagtaagggttacacctaattatcaaacaggtagtttaatcaccaccacccag\n-gtaactgttttgtcatccactgtttatcggtcgtcccggcaacgcggtttaagagattcttgatctgccc\n-gtctaaacgacgcgcctagggtaccagcactttataccactgcgcctgatccctgaacataaacgcccgt\n-tttttctgtttattcagatgcggtaagggcggagtttgcggatctttggcatttgaggtcgaaatcggta\n-ttcaccggattgtacagattgagcagtggcacagagtcgtcgtaaccaaaccaggcgtttgatgtcatta\n-cgcatacgcataaagtcgacccgtcagcagggtgtggccgatatcgccagtggcaaactttgctctgcaa\n-ctgggtatccaacggagaagtttttggcagctctcatcatcaacgacgtattacgtgccagatatatggc\n-gctttatccgctggcgctaaatgcggcacactgttgctgtaagcattcgccgacggagcagacgcgcgta\n-accataaaacgcctgttttgcgagtttttgtttcagcaagcgcaggtctgaccacagtaaaggtggtcgt\n-ttaaattcgtgatcgaaagctgtagccgaccatctttctcattcgagaataggtgttgttcgtcgcccct\n-tcattaaagtctgtccggcagacgcttaccgtcggccagcggctcaacgttcccttctttcggcaaccat\n-ccggtaaaccggtttccggctcgttctgggaagttaagaatggacaggtaacaattggtttaaatcatcc\n-gacgtccaggtgaacgccggtgcaatagcattaacgctgctctcttgaccctttctgcgggcattgcaga\n-actgcgcaagaccggtcaggcgataagagtaaacaccgtcattcattccaaccgaatcgctaaagtcaat\n-aaccacgtctggaacaggctgtcagtacggctttaaactgaacttctttcagcggttcggtggtcggacg\n-ctttgctgtagccaatattcaacaggcgccaggactgcttttaaccgtaagcaggaaactcggccagcgc\n-ataatttcagcgcgttccagcatatacgggtcaactgaccgcatcgtataagaagttggccctgcaaact\n-tcaaggccattcagatagttattctggctttggcccgccttctgccgcaaaagccggtcgaatgatcagg\n-tggtcataggtgttggatg'..b'ta\n-cctgaaagccgcctgcaagtgccagttattttgattaaactgtcgagcggcacgatgtgtttacaggcac\n-gccaaagccggaaaaccacctcttctaatcggcgt\n+ggtttttggggggaaaaaagggaaattttcctctggcggggttcccccaataggcccgagccccaattgttcgggcgacagggcggggttggggaagcacttttcactaacaagaacgtgggtcgaggggcgcccgacgctgtttaagggagtttttccagccgcggatgtgcagcctaaatttccatggggcctttgggaatcattgccccggttcagctcaactgtttcaatggttcccaaacggcctttggccggctggcgaccgccggttgcgccccggtgagtaagccagtccgccggtgcagaatgctgtgccgggccgagggtttgggtccgggaaggatggccaactcgccatgcccagggtattcgttgaaatcggccagcggaattcatcgcgcgatggttaaatcgctggaccgggggttccgagggctctggaactgaggttcccggggaccgcggcacgccggttgggtcggacgggggtgccgggaacaattggccccccaagcagttttttttgaccaggccgggtattcgagagcttccagaccgcagccgagcgtgtcgagcaggcaggtaatgtggcgggtcgtaggccactttagagctgatttcgtagttcatgacgtaatcgagaatatcaacgatttcacagatcaagattccggggcggaattttgtgattttgagctgaacatatgggtacgtttccttattgttattcgtagggtttactggcgcttatccacgcgaacaaacgggcgggtcttccggtccatacatagattggcggaagtacggataatttttgttgtcctgaacgctttttcgtataatgtgcgccgcccagccggtgcgcgggcgattaacaaacagtggtgtgaacatcgtcggtgggaacgcccatcatggtgtaggaatcagcaagagaaccagtcgaattggggaacatctttttgctctccaacatcaaccggtttccaggcgatcggccgatgtggacatcttcagccggagccgccttctgcgagagctgccttcgccacagcgttttaatcaccctggtggcgcggtcagcgatggtgtaaaccggatgaaccaagaaccaatgacccacttctttgttctcacgcgctttgcggatatctgctcggctgtcgtccggcgttccgtagcgttgcatgatctccagcgacacttcattcgccccccgtgttggccccgccgcagtgcgccaatcgcggccaataatcgcggaatacatatcatagagccggtgccgtcgcaatcatcccgactggtaaagtggagcgtaaactcggtgtttcgcggcgaacagcaccagtcgagataatgcatcgccttttttgcccagctttgcgatggctttcgccgtgcagccagaggcaggaagtgaccgccgatggagtcgtccatcgttttctcggttggatgcgttcgcacgttgtggctgtagtgaaccaataggagaacgagctaagcgacgccacagtttggtcgggccaatatcccgcgccgccagagacggtatgcccctctttgttctggcagcgtgcagccgagcgcgaacaccggttgcgcataacatccatcgggtgcgacgccgccggtaaggcttccagcacggtacgcacgttaggccggtaaaacgcgcaggctttccagttcgttttgtaagcggcgagttcgtcacgggtcggagtttgccgtggatcaggcagatgcgccacttcttcaaatcgcaatgtttcgccaatcaagaatatcgtagtccgcggtaatgcaggtccattgcgccacttaaaccctcacggtgcagagcgccgtattgccccgcccgaacgccagaaagtgccagcagattgttttcggttttaatggacatgggtactgttgcaggatcgttgtgtcgctcatgttggtcgtcattgttatcatttgtaggcgagatttttgtccggattgcgacgcatatgcgtctatccgacctaccagttcagttcaccccgtaggcctgaaagtcgcgtcagcggcgcatcaggcacggtgtcggatgcgacgcttatgcgtctatccgacctacagtttcagtgcaccgccgtaggccctgataagtcgcttcagcgcgcatcaggcattcggttgtcggatgctacgctttgccgtcttatccgaacctatacagttcagtgtgcacccgtagtgcctgatatgtcacgtcagcgggcatcaggcaatgcggttgtccggatgcgacgcgccatccgtcttactcgacctacagttcagtgcacctcgtaggcctgataagtcggcgtcagcgacgcatcaggccatcggctgtcgaatacaatcaacgggcgttttttatttcacctggcttacgggccaaacaggttgtcgagctctcattcgtaactggtagtaagttgatgctttcgtacagctcgttggcggtctgcaatggtgtcgatgacgcttttctgcgtgcctcctggccggacggttggtagacatgttcagcggcgcggttcatggcgcaggatacggctgaaagtgggtacagcgccattgcgacatggcgctgcggaattgtcgtggtaaacaagcggcggtggggcaccaaatgtcggtgaatttggcggagatcgcactcaccgcatcggcaaactggcggtaacatggcagatgtttcggtaatcgcctccgggaacaacactcggcacccgctcaacataggccgcgtcacgctcgatcggcatccagcccctctaccgccagagcatcggtggcgcgccatgatcacgaaatcaggattcggtttccgcatccaccgccgcgcggatccgatccaccatctcgttctttcgagacgacgctttattcgaccgatgacccgcagcgtttcgcaccaacctgatccttcaagtatgcagatcctgccgcaccggcttttaatgcatcgatttcacggtgcgcgccacggttaaaggtccgaagaacgcaaaaaaaccgatatccgcatccaaccagcagcggcgcgaacaaacgcgtgatacggcgaatgtcggtcagcacatcatcaagggtagaaatacccgagatcgggcaccccagcgaacctgccgccacgccagccttgtccagaaagataaatttgctgatattccggcacgctgcgccaacagtcgcatgattagcgttgaggtgccaacaatctgcaatggattttctttagtcagtgcaggccgaaacgctttacctggagagtgaagagacatagctcccagtcctttggtatcaacttgttatttgcgttgataaagacaaagcaggggtgtggccacaattgccttaataaattaaatgtttaatttaaattttgtttagagataagtcatggaactaatccgcaaaatatgccgtttacagtaacgttcagcaagtgttcaccgcgtttcagtgtgcaacaattaggaaacaagactaaaccaatattcggtttcttactttgcgtgcgctatggcaactccacacggcttaatgacgacaaccggttatctggacggtatctgtaacggcgcctgttcgagctgtttcgccgatatcagcctcgagttgatcacctgggcgaacattacccctattcagcttggctttgaaaagcatttgtgacctaacatccgcaagaaactggccaaacgaacgctgtgacgccatcatcgcgggcgtggtcgaaacggcgctgtacctgaaagccgcctgcaagtgccagttattttgattaaactgtcgagcggcacgatgtgtttacaggcacgccaaagccggaaaaccacctcttctaatcggcgt\n' |
| b |
| diff -r 13c8e1ce0a15 -r 51ffe0318eea test-data/lordec/trimmed_reads.fa --- a/test-data/lordec/trimmed_reads.fa Fri Nov 24 12:47:46 2017 -0500 +++ b/test-data/lordec/trimmed_reads.fa Wed Sep 05 09:03:30 2018 -0400 |
| b |
| @@ -1,4 +1,2 @@ >m120131_103014_sidney_c100278822550000001523007907041295_s1_p0/10155 -GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG -GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG -GGGGGGGGGG +GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |