| Previous changeset 0:9cd4a30cb4f8 (2018-01-22) Next changeset 2:30cdbc4faefa (2018-01-24) |
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Commit message:
planemo upload for repository https://github.com/shao-lab/MAnorm/tree/master/galaxy-tool |
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removed:
test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_after_normalization.png test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_before_normalization.png test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_with_P-value.png test-data/output_dir/output_figures/sample1_vs_sample2_read_density_on_common_peaks.png test-data/output_dir/output_filters/sample1_M_above_1.0_biased_peaks.bed test-data/output_dir/output_filters/sample1_M_below_-1.0_biased_peaks.bed test-data/output_dir/output_filters/sample1_vs_sample2_unbiased_peaks.bed test-data/output_dir/output_tracks/sample1_vs_sample2_A_values.wig test-data/output_dir/output_tracks/sample1_vs_sample2_M_values.wig test-data/output_dir/output_tracks/sample1_vs_sample2_P_values.wig test-data/output_dir/sample1_vs_sample2_all_MAvalues.xls |
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| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_figures/sample1_vs_sample2_read_density_on_common_peaks.png |
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| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_filters/sample1_M_above_1.0_biased_peaks.bed --- a/test-data/output_dir/output_filters/sample1_M_above_1.0_biased_peaks.bed Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,194 +0,0 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| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_filters/sample1_M_below_-1.0_biased_peaks.bed --- a/test-data/output_dir/output_filters/sample1_M_below_-1.0_biased_peaks.bed Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,323 +0,0 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|
| b |
| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_filters/sample1_vs_sample2_unbiased_peaks.bed --- a/test-data/output_dir/output_filters/sample1_vs_sample2_unbiased_peaks.bed Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,254 +0,0 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|
| b |
| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_tracks/sample1_vs_sample2_A_values.wig --- a/test-data/output_dir/output_tracks/sample1_vs_sample2_A_values.wig Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
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|
| b |
| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_tracks/sample1_vs_sample2_M_values.wig --- a/test-data/output_dir/output_tracks/sample1_vs_sample2_M_values.wig Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_tracks/sample1_vs_sample2_P_values.wig --- a/test-data/output_dir/output_tracks/sample1_vs_sample2_P_values.wig Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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|
| b |
| diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/sample1_vs_sample2_all_MAvalues.xls --- a/test-data/output_dir/sample1_vs_sample2_all_MAvalues.xls Mon Jan 22 04:03:44 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,847 +0,0 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2685546875\tsample2_unique\t2.52373\t8.91543\n-chr22\t46034769\t46035377\t468\t-2.12268\t2.41645\t0.0111083984375\tsample2_unique\t2.55817\t11.14087\n-chr22\t46462688\t46464235\t1095\t-4.63266\t2.04373\t2.62260437012e-06\tsample2_unique\t0.82783\t20.53567\n-chr22\t46480103\t46483502\t2119\t-6.50267\t3.09984\t4.29099942762e-24\tsample2_unique\t0.90032\t81.63834\n-chr22\t46589567\t46590561\t575\t-3.53574\t2.08496\t0.000228881835938\tsample2_unique\t1.24582\t14.44832\n-chr22\t46630205\t46632040\t964\t-4.82782\t2.81468\t6.91215973347e-11\tsample2_unique\t1.32021\t37.49406\n-chr22\t46786198\t46787218\t556\t-2.17318\t2.69616\t0.00259399414062\tsample2_unique\t3.05161\t13.76326\n-chr22\t46851230\t46852461\t777\t-3.73263\t2.19616\t3.43322753906e-05\tsample2_unique\t1.25688\t16.70809\n-chr22\t46959098\t46960261\t566\t-1.12879\t3.45345\t0.0146124958992\tsample2_unique\t7.40785\t16.19914\n-chr22\t46999309\t47001409\t653\t-3.67385\t3.29248\t1.53449946083e-08\tsample2_unique\t2.74262\t35.00296\n-chr22\t47044982\t47046222\t699\t-3.31482\t2.42899\t0.000163078308105\tsample2_unique\t1.70714\t16.98748\n-chr22\t47047805\t47048545\t152\t-2.41588\t2.28493\t0.0047607421875\tsample2_unique\t2.10963\t11.25793\n-chr22\t47149605\t47151076\t715\t-2.67322\t3.19616\t6.5378844738e-05\tsample2_unique\t3.62894\t23.14727\n-chr22\t47330272\t47332573\t1362\t-4.26457\t2.96537\t4.58385329694e-09\tsample2_unique\t1.78149\t34.24105\n-chr22\t47732688\t47733415\t541\t-3.82033\t1.58496\t0.00146484375\tsample2_unique\t0.79818\t11.27554\n-chr22\t48026267\t48029425\t1483\t-6.48735\t3.75191\t9.4774232035e-38\tsample2_unique\t1.42231\t127.60889\n-chr22\t49447787\t49448819\t651\t-1.59848\t2.78112\t0.0138854980469\tsample2_unique\t3.95007\t11.96178\n-chr22\t49764635\t49765621\t465\t-5.74732\t1.54373\t2.62260437012e-06\tsample2_unique\t0.39779\t21.36815\n-chr22\t50048953\t50052069\t1968\t-4.68868\t4.11681\t2.45337003701e-23\tsample2_unique\t3.41638\t88.10488\n-chr22\t50097692\t50098812\t398\t-3.58788\t2.11441\t0.0001220703125\tsample2_unique\t1.24874\t15.01518\n-chr22\t50179678\t50180601\t294\t-4.01722\t1.69616\t0.00042724609375\tsample2_unique\t0.80527\t13.03908\n-chr22\t50200909\t50202776\t1122\t-4.80832\t2.80367\t6.91215973347e-11\tsample2_unique\t1.31906\t36.95839\n-chr22\t50328011\t50328960\t555\t-1.33519\t2.95943\t0.0236053466797\tsample2_unique\t4.89679\t12.35502\n-chr22\t50523560\t50524565\t327\t-2.17318\t2.69616\t0.00259399414062\tsample2_unique\t3.05161\t13.76326\n-chr22\t50543552\t50544765\t680\t-2.99928\t2.61441\t0.000163078308105\tsample2_unique\t2.1656\t17.31619\n-chr22\t50555334\t50558338\t634\t-3.45685\t3.16993\t3.17580997944e-07\tsample2_unique\t2.71604\t29.82303\n-chr22\t50606763\t50608437\t293\t-1.16075\t3.2539\t0.018482208252\tsample2_unique\t6.37986\t14.26369\n-chr22\t50679295\t50680533\t605\t-3.44056\t2.5\t5.00679016113e-05\tsample2_unique\t1.7168\t18.63935\n-chr22\t50707546\t50708451\t727\t-1.16264\t3.9915\t0.00607143592788\tsample2_unique\t10.63081\t23.79885\n-chr22\t50752385\t50753651\t824\t-2.50007\t2.88078\t0.000317096710205\tsample2_unique\t3.09673\t17.51859\n-chr22\t50756814\t50758035\t795\t-4.29001\t1.85022\t6.48498535156e-05\tsample2_unique\t0.81519\t15.94713\n-chr22\t50768593\t50770366\t746\t-4.69318\t3.57105\t2.05022630817e-16\tsample2_unique\t2.33668\t60.44872\n-chr22\t50936245\t50937827\t1085\t-3.40584\t3.39232\t2.82670953311e-08\tsample2_unique\t3.22523\t34.18378\n-chr22\t50977507\t50978750\t386\t-3.86263\t2.26958\t1.81198120117e-05\tsample2_unique\t1.26424\t18.39058\n-chr22\t51051823\t51052907\t310\t-2.57151\t2.66993\t0.000924110412598\tsample2_unique\t2.61023\t15.516\n-chr22\t51059873\t51061094\t486\t-1.86169\t3.529\t0.000701732933521\tsample2_unique\t6.05512\t22.0063\n-chr22\t51180653\t51181336\t514\t-3.09528\t1.83621\t0.002685546875\tsample2_unique\t1.22143\t10.43855\n' |
