| Previous changeset 17:1e45ea50f145 (2019-03-07) Next changeset 19:9d758344d36e (2019-06-19) |
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Commit message:
planemo upload commit dc6d9d8f1808c4c6bcc42ac6861a8b811e4cee58-dirty |
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modified:
README.rst id_converter.py id_converter.xml proteore_id_mapping_Human.loc.sample proteore_id_mapping_Mouse.loc.sample proteore_id_mapping_Rat.loc.sample tool_data_table_conf.xml.sample |
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added:
tool-data/Human_id_mapping_09-05-2019.tsv tool-data/Mouse_id_mapping_09-05-2019.tsv tool-data/Rat_id_mapping_09-05-2019.tsv |
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removed:
test-data/human_id_mapping_file.tsv test-data/mouse_id_mapping.tsv |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 README.rst --- a/README.rst Thu Mar 07 07:49:18 2019 -0500 +++ b/README.rst Fri May 10 10:38:46 2019 -0400 |
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| @@ -25,7 +25,9 @@ * neXtProt ID (e.g. NX_P31946) -* Uniprot accession number (e.g. P31946) +* UniProt accession number (e.g. P31946 - reviewed entries only) + +* UniProt accession number (e.g. P31946 - reviewed and unreviewed entries) * Uniprot ID (e.g 1433B_HUMAN) @@ -69,6 +71,9 @@ * HUMAN_9606_idmapping.dat (Uniprot 23/10/18) Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ +* Human uniprot-AC entries reviewed : https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606&format=list + + * nextprot_ac_list_all.txt (Nextprot released on 10/10/2018) Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/ @@ -78,8 +83,13 @@ * MOUSE_10090_idmapping.dat (Uniprot 23/10/18) Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ +* Mouse uniprot-AC entries reviewed : https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090&format=list + + * RAT_10116_idmapping.dat (Uniprot 23/10/18) Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ * RAT_10116_idmapping_selected.tab (Uniprot 23/10/18) Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ + +* Rat uniprot-AC entries reviewed : https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116&format=list |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 id_converter.py --- a/id_converter.py Thu Mar 07 07:49:18 2019 -0500 +++ b/id_converter.py Fri May 10 10:38:46 2019 -0400 |
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| @@ -1,4 +1,4 @@ -import sys, os, argparse, re, csv +import sys, os, argparse, re, csv, itertools def get_args() : parser = argparse.ArgumentParser() @@ -58,6 +58,21 @@ return new_file, ids_list +def output_one_id_one_line(line,convert_ids,target_ids): + + ids_not_processed = ["GI","PDB","GO","PIR","MIM","UniGene","BioGrid","STRING"] #ids with multiple ids per line in output file + ids_not_processed = [id for id in ids_not_processed if id in target_ids] #ids present in target_ids with multiple ids per line in output file + + for id_not_processed in ids_not_processed : + index = target_ids.index(id_not_processed) + convert_ids[index] = [";".join(convert_ids[index])] + + res = itertools.product(*convert_ids) #getting all possibilities between lists of ids + res = [list(e) for e in res] #convert to lists + res = [line+list(ids) for ids in res] #adding the rest of the line + + return(res) + #return the column number in int format def nb_col_to_int(nb_col): try : @@ -90,7 +105,7 @@ for id in ids : for target_id in id_out : if id in ids_dictionary : - res = ";".join(ids_dictionary[id][target_id]) + res = ids_dictionary[id][target_id] else : res="" @@ -149,36 +164,49 @@ if len(ids_dictionary[id][ids_dictionary_index[other_id_type]]) > 1 and '' in ids_dictionary[id][ids_dictionary_index[other_id_type]] : ids_dictionary[id][ids_dictionary_index[other_id_type]].remove('') + print ("dictionary created") + #Get file and/or ids from input if args.input_type == "list" : ids = get_input_ids_from_string(args.input) elif args.input_type == "file" : input_file, ids = get_input_ids_from_file(args.input,args.column_number,header) + print ("starting mapping") + #Mapping ids result_dict = map_to_dictionary(ids,ids_dictionary,args.id_type,target_ids) - #creating output file - if header : - output_file=[input_file[0]+target_ids] - input_file = input_file[1:] - else : - output_file=[[args.id_type]+target_ids] + print ("mapping done") - if args.input_type=="file" : - for line in input_file : - output_file.append(line+result_dict[line[args.column_number]]) - elif args.input_type=="list" : - for id in ids : - output_file.append([id]+result_dict[id]) - - #convert blank to NA - output_file = blank_to_NA(output_file) - - #write output file + print ("creating output file") + #creating output file with open(args.output,"w") as output : writer = csv.writer(output,delimiter="\t") - writer.writerows(output_file) + #writer.writerows(output_file) + + #write header + if header : + writer.writerow(input_file[0]+target_ids) + input_file = input_file[1:] + else : + writer.writerow([args.id_type]+target_ids) + + #write lines + if args.input_type=="file" : + for line in input_file : + tmp = output_one_id_one_line(line,result_dict[line[args.column_number]],target_ids) + tmp = blank_to_NA(tmp) + for row in tmp : + writer.writerow(row) + elif args.input_type=="list" : + for id in ids : + tmp = output_one_id_one_line([id],result_dict[id],target_ids) + tmp = blank_to_NA(tmp) + for row in tmp : + writer.writerow(row) + + print ("output file created") if __name__ == "__main__": main() |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 id_converter.xml --- a/id_converter.xml Thu Mar 07 07:49:18 2019 -0500 +++ b/id_converter.xml Fri May 10 10:38:46 2019 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="IDconverter" name="ID Converter" version="2019.03.07"> +<tool id="IDconverter" name="ID Converter" version="2019.05.10"> <description>(Human, Mouse, Rat) </description> <requirements> @@ -64,7 +64,9 @@ </param> <when value="Human"> <param name="mapping_file" type="select" label="Release" > - <options from_data_table="proteore_id_mapping_Human"/> + <options from_data_table="proteore_id_mapping_Human"> + <filter type="sort_by" column="0"/> + </options> </param> <param name="idtypein" type="select" label="Type/source of IDs" optional="false" > <option value="neXtProt" >neXtProt ID (e.g. NX_P31946)</option> @@ -88,7 +90,8 @@ <section name="idto" title="Target type" expanded="True" > <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" > <option value="neXtProt" >neXtProt ID (e.g. NX_P31946)</option> - <option value="UniProt-AC" >UniProt accession number (e.g. P31946)</option> + <option value="UniProt-AC_reviewed" >UniProt accession number (e.g. P31946 - reviewed entries only)</option> + <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option> <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> @@ -109,7 +112,9 @@ </when> <when value="Mouse"> <param name="mapping_file" type="select" label="Release" > - <options from_data_table="proteore_id_mapping_Mouse"/> + <options from_data_table="proteore_id_mapping_Mouse"> + <filter type="sort_by" column="0"/> + </options> </param> <param name="idtypein" type="select" label="Type/source of IDs" optional="false" > <option value="UniProt-AC" selected="True" >UniProt accession number (e.g. P31946)</option> @@ -131,7 +136,8 @@ </param> <section name="idto" title="Target type of IDs" expanded="True" > <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" > - <option value="UniProt-AC" >UniProt accession number (e.g. P31946)</option> + <option value="UniProt-AC_reviewed" >UniProt accession number (e.g. P31946 - reviewed entries only)</option> + <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option> <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> @@ -151,7 +157,9 @@ </when> <when value="Rat"> <param name="mapping_file" type="select" label="Release" > - <options from_data_table="proteore_id_mapping_Rat"/> + <options from_data_table="proteore_id_mapping_Rat"> + <filter type="sort_by" column="0"/> + </options> </param> <param name="idtypein" type="select" label="Select type/source of identifier of your list" optional="false" > <option value="UniProt-AC" selected="True" >UniProt accession number (e.g. P31946)</option> @@ -173,7 +181,8 @@ </param> <section name="idto" title="Target type of IDs" expanded="True" > <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" > - <option value="UniProt-AC" >UniProt accession number (e.g. P31946)</option> + <option value="UniProt-AC_reviewed" >UniProt accession number (e.g. P31946 - reviewed entries only)</option> + <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option> <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> @@ -238,7 +247,9 @@ * neXtProt ID (e.g. NX_P31946) -* UniProt accession number (e.g. P31946) +* UniProt accession number (e.g. P31946 - reviewed entries only) + +* UniProt accession number (e.g. P31946 - reviewed and unreviewed entries) * UniProt ID (e.g 1433B_HUMAN) @@ -289,11 +300,14 @@ - **HUMAN_9606_idmapping_selected.tab (Uniprot 23/10/2018)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ - **HUMAN_9606_idmapping.dat (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ +- `Human uniprot-AC entries reviewed <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606&format=list>`_. - **nextprot_ac_list_all.txt (Nextprot released on 10/10/2018)**: ftp://ftp.nextprot.org/pub/current_release/ac_lists/ - **MOUSE_10090_idmapping_selected.tab (Uniprot 23/10/2018)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ - **MOUSE_10090_idmapping.dat (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ +- `Mouse uniprot-AC entries reviewed <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090&format=list>`_. - **RAT_10116_idmapping.dat (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ - **RAT_10116_idmapping_selected.tab (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ +- `Rat uniprot-AC entries reviewed <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116&format=list>`_. ----- |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 proteore_id_mapping_Human.loc.sample --- a/proteore_id_mapping_Human.loc.sample Thu Mar 07 07:49:18 2019 -0500 +++ b/proteore_id_mapping_Human.loc.sample Fri May 10 10:38:46 2019 -0400 |
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| @@ -1,3 +1,3 @@ #This file lists the locations of reference file for id_converter tool -#<id> <name> <species> <value> -human_id_mapping_23-10-2018 Human (homo sapiens 23/10/2018) Human tool-data/human_id_mapping_23-10-2018.tsv +#<id> <release> <name> <species> <value> +9979818977 human_id_mapping_23-10-2018 Human (homo sapiens 23/10/2018) Human tool-data/human_id_mapping_23-10-2018.tsv |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 proteore_id_mapping_Mouse.loc.sample --- a/proteore_id_mapping_Mouse.loc.sample Thu Mar 07 07:49:18 2019 -0500 +++ b/proteore_id_mapping_Mouse.loc.sample Fri May 10 10:38:46 2019 -0400 |
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| @@ -1,3 +1,3 @@ #This file lists the locations of reference file for id_converter tool -#<id> <name> <species> <value> -mouse_id_mapping_23-10-2018 Mouse (Mus musculus 23/10/2018) Mouse tool-data/mouse_id_mapping_23-10-2018.tsv +#<id> <release> <name> <species> <value> +9979818977 mouse_id_mapping_23-10-2018 Mouse (Mus musculus 23-10-2018) Mouse tool-data/mouse_id_mapping_23-10-2018.tsv |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 proteore_id_mapping_Rat.loc.sample --- a/proteore_id_mapping_Rat.loc.sample Thu Mar 07 07:49:18 2019 -0500 +++ b/proteore_id_mapping_Rat.loc.sample Fri May 10 10:38:46 2019 -0400 |
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| @@ -1,3 +1,3 @@ #This file lists the locations of reference file for id_converter tool -#<id> <name> <species> <value> -rat_id_mapping_23-10-2018 Rat (Rattus norvegicus 23/10/2018) Rat tool-data/rat_id_mapping_23-10-2018.tsv +#<id> <release> <name> <species> <value> +9979818977 rat_id_mapping_23-10-2018 Rat (Rattus norvegicus 23-10-2018) Rat tool-data/rat_id_mapping_23-10-2018.tsv |
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| diff -r 1e45ea50f145 -r 5252bbcfbdd7 test-data/human_id_mapping_file.tsv --- a/test-data/human_id_mapping_file.tsv Thu Mar 07 07:49:18 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,172998 +0,0 @@\n-UniProt-AC\tUniProt-ID\tGeneID\tRefSeq\tGI\tPDB\tGO\tPIR\tMIM\tUniGene\tEnsembl\tEnsembl_TRS\tEnsembl_PRO\tneXtProt\tBioGrid\tSTRING\tKEGG\r\n-P31946\t1433B_HUMAN\t7529\tNP_003395.1; NP_647539.1; XP_016883528.1\t4507949; 377656702; 67464628; 1345590; 1034625756; 21328448; 377656701; 67464627; 78101741\t2BQ0:A; 2BQ0:B; 2C23:A; 4DNK:A; 4DNK:B; 5N10:A; 5N10:B; 6BYK:A; 6BYK:B; 6BYK:C; 6BYK:D\tGO:0005737; GO:0005829; GO:0070062; GO:0005925; GO:0042470; GO:0016020; GO:0005739; GO:0005634; GO:0048471; GO:0017053; GO:0045296; GO:0019899; GO:0042826; GO:0042802; GO:0051219; GO:0050815; GO:0008022; GO:0019904; GO:0044877; GO:0003714; GO:0051220; GO:0035329; GO:0000165; GO:0061024; GO:0045744; GO:0035308; GO:0045892; GO:0043085; GO:1900740; GO:0051291; GO:0006605; GO:0043488; GO:0016032\tS34755\t601289\tHs.643544\tENSG00000166913\tENST00000353703; ENST00000372839\tENSP00000300161; ENSP00000361930\tNX_P31946\t113361\t9606.ENSP00000300161\thsa:7529\r\n-P62258\t1433E_HUMAN\t7531\tNP_006752.1\t374074368; 62131678; 67464424; 194379794; 221045758; 5803225; 374074366; 51702210\t2BR9:A; 3UAL:A; 3UBW:A; 6EIH:A\tGO:0090724; GO:0005737; GO:0005829; GO:0070062; GO:0005925; GO:0005871; GO:0042470; GO:0016020; GO:0005739; GO:0005634; GO:0045296; GO:0005246; GO:0019899; GO:0042826; GO:0042802; GO:0044325; GO:0023026; GO:0051219; GO:0050815; GO:0015459; GO:0019904; GO:0046982; GO:0017112; GO:0003723; GO:0097110; GO:0031625; GO:0034605; GO:0021987; GO:0097711; GO:0000086; GO:0035329; GO:0021766; GO:0035556; GO:0000165; GO:0061024; GO:0086013; GO:1905913; GO:1901020; GO:0043154; GO:1902309; GO:0001764; GO:0046827; GO:1900740; GO:0006605; GO:1900034; GO:0051480; GO:0010389; GO:0086091; GO:0003064; GO:0060306; GO:1901016; GO:0021762; GO:0016032\tA61235; I38947\t605066\tHs.513851\tENSG00000108953; ENSG00000274474\tENST00000264335; ENST00000571732; ENST00000616643; ENST00000627231\tENSP00000264335; ENSP00000461762; ENSP00000481059; ENSP00000487356\tNX_P62258\t113363\t9606.ENSP00000264335\thsa:7531\r\n-Q04917\t1433F_HUMAN\t7533\tNP_003396.1\t4507951; 437363; 83754686; 83754699; 83754700; 1345593; 83754684; 83754685; 28862; 83754683\t2C63:A; 2C63:B; 2C63:C; 2C63:D; 2C74:A; 2C74:B\tGO:0005737; GO:0005829; GO:0070062; GO:0014704; GO:0005739; GO:0005886; GO:0003779; GO:0019899; GO:0035259; GO:0042802; GO:0005159; GO:0044325; GO:0019904; GO:0046982; GO:0017080; GO:0006713; GO:0042921; GO:0006886; GO:0086010; GO:0061024; GO:0050774; GO:1900740; GO:0045893; GO:0045664; GO:2000649; GO:0002028; GO:0048167; GO:0021762\tS34756; S38509; S38532\t113508\tHs.226755\tENSG00000128245\tENST00000248975\tENSP00000248975\tNX_Q04917\t113365\t9606.ENSP00000248975\thsa:7533\r\n-P61981\t1433G_HUMAN\t7532\tNP_036611.2\t6016838; 380764684; 635576381; 82407956; 82407958; 550545213; 635576377; 380765197; 82407950; 550545214; 119592210; 1006588564; 1006588561; 635576379; 21464101; 82407952; 48428721; 5726310; 550545212; 635576378; 1006588559; 18088513; 49456805; 1006588565; 550545215; 1006588558; 49456763; 1006588562; 82407948; 82407954; 635576376; 635576380\t2B05:A; 2B05:B; 2B05:C; 2B05:D; 2B05:E; 2B05:F; 3UZD:A; 4E2E:A; 4J6S:A; 4J6S:B; 4J6S:C; 4J6S:D; 4O46:A; 4O46:B; 4O46:C; 4O46:D; 4O46:E; 4O46:F; 5D3E:A; 5D3E:B; 5D3E:E; 5D3E:F; 5D3E:I; 5D3E:J; 6BYJ:A; 6BYJ:B; 6BYJ:C; 6BYJ:D; 6BYJ:E; 6BYJ:F; 6BYL:A; 6BYL:B; 6BYL:C; 6BYL:D; 6BYL:E; 6BYL:F; 6BZD:A; 6BZD:B; 6BZD:C; 6BZD:D; 6FEL:A; 6FEL:B; 6FEL:C; 6FEL:D\tGO:0005829; GO:0070062; GO:0005925; GO:0016020; GO:0005739; GO:0043209; GO:0042802; GO:0005159; GO:0019904; GO:0005080; GO:0008426; GO:0030971; GO:0003723; GO:0032869; GO:0097711; GO:0000086; GO:0061024; GO:0006469; GO:1900740; GO:0006605; GO:0010389; GO:0045664; GO:0009966; GO:0048167\t\t605356; 617665\tHs.744840\tENSG00000170027\tENST00000307630\tENSP00000306330\tNX_P61981\t113364\t9606.ENSP00000306330\thsa:7532\r\n-P31947\t1433S_HUMAN\t2810\tNP_006133.1\t436408756; 306991738; 969812714; 350610438; 350610440; 2702355; 393715161; 394985958; 398953; 305677674; 305677670; 350610436; 528082005; 390981001; 1025734704; 187302; 12654345; 61680850; 49456807; 128042'..b'\t\tGO:0005634; GO:0046872; GO:0006355; GO:0006351\t\t\t\tENSG00000130165\tENST00000591912\tENSP00000466665\t\t\t\t\r\n-K7ENX9\tK7ENX9_HUMAN\t\t\t\t\tGO:0005622; GO:0003676; GO:0006355\t\t\t\tENSG00000171827\tENST00000588644\tENSP00000467139\t\t\t\t\r\n-K7EQS8\tK7EQS8_HUMAN\t\t\t\t\t\t\t\t\tENSG00000013306\tENST00000593166\tENSP00000467964\t\t\t\t\r\n-K7ESP6\tK7ESP6_HUMAN\t\t\t\t\tGO:0016763; GO:0006400\t\t\t\tENSG00000213339\tENST00000592254\tENSP00000468811\t\t\t\t\r\n-Q1KLJ7\tQ1KLJ7_HUMAN\t\t\t94435285\t\t\t\t\tHs.181244; Hs.713441\t\t\t\t\t\t\t\r\n-Q8MH55\tQ8MH55_HUMAN\t\t\t21686458\t\t\t\t\tHs.387679; Hs.591798; Hs.706240\t\t\t\t\t\t\t\r\n-Q8WLT5\tQ8WLT5_HUMAN\t\t\t18140143; 12585129\t\t\t\t\tHs.181244; Hs.713441\t\t\t\t\t\t\t\r\n-Q9GJ13\tQ9GJ13_HUMAN\t\t\t10799636\t\t\t\t\tHs.654404; Hs.726974; Hs.77961\t\t\t\t\t\t\t\r\n-Q9MY10\tQ9MY10_HUMAN\t\t\t7643734\t\tGO:0042613; GO:0019882; GO:0006955\t\t\tHs.534322; Hs.696211; Hs.736560\t\t\t\t\t\t\t\r\n-A0A0B7MHW2\tA0A0B7MHW2_HUMAN\t\t\t752293404\t\tGO:0016021; GO:0042612; GO:0002474; GO:0006955\t\t\tHs.654404; Hs.726974; Hs.77961\t\t\t\t\t\t\t\r\n-A0A0D4WPD0\tA0A0D4WPD0_HUMAN\t\t\t768801818\t\tGO:0016021; GO:0005739; GO:0008137\t\t\t\t\t\t\t\t\t\t\r\n-A0A0D9SG05\tA0A0D9SG05_HUMAN\t\t\t\t\tGO:0005634; GO:0043565; GO:0006355\t\t\t\tENSG00000255192\tENST00000629403\tENSP00000487045\t\t\t\t\r\n-A0A0E3DBZ4\tA0A0E3DBZ4_HUMAN\t\t\t631899138\t\t\t\t\tHs.181244; Hs.713441\t\t\t\t\t\t\t\r\n-A0A0E3DD62\tA0A0E3DD62_HUMAN\t\t\t631899299\t\t\t\t\t\t\t\t\t\t\t\t\r\n-A0A0E3DDJ8\tA0A0E3DDJ8_HUMAN\t\t\t631899882\t\tGO:0042613; GO:0019882; GO:0006955\t\t\tHs.409934; Hs.534322\t\t\t\t\t\t\t\r\n-A0A0E3JM36\tA0A0E3JM36_HUMAN\t\t\t794447129\t\tGO:0016021; GO:0005739; GO:0004129; GO:0019646\t\t\t\t\t\t\t\t\t\t\r\n-A0A0S2Z658\tA0A0S2Z658_HUMAN\t387032\tNP_061983.2; XP_005249152.1\t15559336; 957951937; 17738285; 530381971; 189055145; 54873532; 119623547\t\tGO:0005829; GO:0005654; GO:0003700; GO:0046872; GO:0003676\t\t\tHs.44720; Hs.739171\t\t\t\t\t\t\thsa:387032\r\n-A0A0U2Q241\tA0A0U2Q241_HUMAN\t\t\t961591017\t\tGO:0016021; GO:0042612; GO:0002474; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n-A0A140VJU3\tA0A140VJU3_HUMAN\t6423\tNP_003004.1\t119625354; 332367779; 48475052; 193786801; 253784082; 10946503\t\tGO:0005615; GO:0061133; GO:0048018; GO:0017147; GO:0006915; GO:0060349; GO:0001569; GO:0031668; GO:0071481; GO:0002063; GO:0030199; GO:0060028; GO:0048546; GO:0042733; GO:0071425; GO:0008584; GO:0030514; GO:0090090; GO:0010667; GO:0030336; GO:0043154; GO:0061185; GO:1902042; GO:0010629; GO:0043508; GO:0042662; GO:0050732; GO:2000041; GO:0090179; GO:0045766; GO:0090263; GO:0030307; GO:0008284; GO:0045669; GO:0033138; GO:0045944; GO:0036342; GO:1904956; GO:0010975; GO:2000035; GO:0042493; GO:0007584; GO:0061056; GO:0090244\t\t\tHs.481022\t\t\t\t\t\t\thsa:6423\r\n-A0A141AZ76\tA0A141AZ76_HUMAN\t\t\t801161558\t\t\t\t\tHs.654404; Hs.726974; Hs.77961\t\t\t\t\t\t\t\r\n-A0A141ZQW8\tA0A141ZQW8_HUMAN\t\t\t1002819919\t\tGO:0016021; GO:0005739; GO:0008137\t\t\t\t\t\t\t\t\t\t\r\n-A0A0F6TN19\tA0A0F6TN19_HUMAN\t\t\t815932489\t\t\t\t\tHs.194143\t\t\t\t\t\t\t\r\n-A0A0G2R1T5\tA0A0G2R1T5_HUMAN\t\t\t661917088\t\tGO:0042613; GO:0019882; GO:0006955\t\t\tHs.485130\t\t\t\t\t\t\t\r\n-A0A0H3WB22\tA0A0H3WB22_HUMAN\t\t\t828959622\t\tGO:0005887; GO:0031532; GO:0007588\t\t\tHs.412710; Hs.658505\t\t\t\t\t\t\t\r\n-A0A0G4PZK8\tA0A0G4PZK8_HUMAN\t\t\t827476083\t\tGO:0016021; GO:0042613; GO:0002504; GO:0006955\t\t\tHs.409934; Hs.534322\t\t\t\t\t\t\t\r\n-A0A0U5EM55\tA0A0U5EM55_HUMAN\t\t\t\t\tGO:0005615; GO:0016021; GO:0005125; GO:0046872; GO:0005164; GO:0006955\t\t\tHs.478275\t\t\t\t\t\t\t\r\n-A0A1L2BM21\tA0A1L2BM21_HUMAN\t\t\t961590231\t\t\t\t\t\t\t\t\t\t\t\t\r\n-A0A126GWJ5\tA0A126GWJ5_HUMAN\t\t\t937628490\t\tGO:0016021; GO:0005886; GO:0004930; GO:0004984\t\t\tHs.446879\t\t\t\t\t\t\t\r\n-A0A126GWR9\tA0A126GWR9_HUMAN\t\t\t937628630\t\tGO:0016021; GO:0005886; GO:0004930; GO:0004984\t\t\tHs.553760\t\t\t\t\t\t\t\r\n-A0A0J9YYI7\tA0A0J9YYI7_HUMAN\t\t\t\t\t\t\t\t\tENSG00000282134\tENST00000632425\tENSP00000488870\t\t\t\t\r\n-A0A0J9YYK8\tA0A0J9YYK8_HUMAN\t\t\t\t\tGO:0016021\t\t\t\tENSG00000182372\tENST00000524258\tENSP00000488898\t\t\t\t\r\n-A0A0M3LBD5\tA0A0M3LBD5_HUMAN\t\t\t685510071\t\t\t\t\tHs.130838\t\t\t\t\t\t\t\r\n-A0A0N7A491\tA0A0N7A491_HUMAN\t\t\t723438819\t\t\t\t\tHs.181244; Hs.713441\t\t\t\t\t\t\t\r\n-A0A0U5J6C8\tA0A0U5J6C8_HUMAN\t\t\t971456308\t\tGO:0016021; GO:0042613; GO:0002504; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n-A0A0K3ASI1\tA0A0K3ASI1_HUMAN\t\t\t926456908\t\t\t\t\t\t\t\t\t\t\t\t\r\n-A0A0N7A4Q4\tA0A0N7A4Q4_HUMAN\t\t\t723438821\t\t\t\t\tHs.181244; Hs.713441\t\t\t\t\t\t\t\r\n' |
| b |
| diff -r 1e45ea50f145 -r 5252bbcfbdd7 test-data/mouse_id_mapping.tsv --- a/test-data/mouse_id_mapping.tsv Thu Mar 07 07:49:18 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,83894 +0,0 @@\n-UniProt-AC\tUniProt-ID\tGeneID\tRefSeq\tGI\tPDB\tGO\tPIR\tMIM\tUniGene\tEnsembl\tEnsembl_TRS\tEnsembl_PRO\tBioGrid\tSTRING\tKEGG\r\n-Q9CQV8\t1433B_MOUSE\t54401\tNP_061223.2; XP_006499972.1\t1009083986; 409974018; 74219534; 31543974; 3065925; 568917832; 18202836; 74191394\t4GNT:A; 5F74:A\tGO:0005737; GO:0005829; GO:0042470; GO:0005634; GO:0048471; GO:0032991; GO:0017053; GO:0045296; GO:0019899; GO:0042826; GO:0042802; GO:0051219; GO:0050815; GO:0008022; GO:0019904; GO:0044877; GO:0003714; GO:0051220; GO:0045744; GO:0035308; GO:0045892; GO:0043085; GO:0051291; GO:0006605\t\t\tMm.34319; Mm.491117\tENSMUSG00000018326\tENSMUST00000018470\tENSMUSP00000018470\t207648\t10090.ENSMUSP00000018470\tmmu:54401\r\n-P62259\t1433E_MOUSE\t22627\tNP_033562.3\t60391192; 226874906\t\tGO:0030424; GO:0090724; GO:0005737; GO:0005829; GO:0005871; GO:0042470; GO:0005739; GO:0005634; GO:0005886; GO:0045296; GO:0005246; GO:0019899; GO:0042826; GO:0042802; GO:0044325; GO:0051219; GO:0050815; GO:0015459; GO:0019904; GO:0046982; GO:0044877; GO:0097110; GO:0031625; GO:0034605; GO:0021987; GO:0021766; GO:0000165; GO:1905913; GO:1901020; GO:1902309; GO:0035308; GO:0001764; GO:0046827; GO:0006605; GO:0051480; GO:0060306; GO:1901016\tI48337\t\tMm.234700; Mm.471625\tENSMUSG00000020849\tENSMUST00000067664\tENSMUSP00000070993\t204619\t10090.ENSMUSP00000070993\tmmu:22627\r\n-P68510\t1433F_MOUSE\t22629\tNP_035868.1\t74226056; 17976969; 1526541; 74139366; 74140682; 3335652; 55976655; 1354808; 26346472; 74214318; 148705461; 38181914; 14198255; 6756037\t5YQG:A; 5YQG:B; 5YQG:C; 5YQG:D\tGO:0005737; GO:0005829; GO:0014704; GO:0005886; GO:0003779; GO:0019899; GO:0035259; GO:0042802; GO:0044325; GO:0019904; GO:0046982; GO:0017080; GO:0007010; GO:0006713; GO:0042921; GO:0006886; GO:0086010; GO:0043066; GO:0050774; GO:0045893; GO:0007088; GO:2000649; GO:0002028\t\t\tMm.332314\tENSMUSG00000018965\tENSMUST00000019109\tENSMUSP00000019109\t204621\t10090.ENSMUSP00000019109\tmmu:22629\r\n-P61982\t1433G_MOUSE\t22628\tNP_061359.2\t74215924; 31543976; 48428722; 3065929\t\tGO:0005829; GO:0043209; GO:0031982; GO:0003779; GO:0042802; GO:0005159; GO:0019904; GO:0005080; GO:0030971; GO:0032869; GO:0006605; GO:0045664; GO:0048167\t\t\tMm.233813\tENSMUSG00000051391\tENSMUST00000055808; ENSMUST00000198270\tENSMUSP00000051223; ENSMUSP00000143631\t204620\t10090.ENSMUSP00000051223\tmmu:22628\r\n-O70456\t1433S_MOUSE\t55948\tNP_061224.2\t148698109; 18202125; 74138801; 134023662; 338817846; 74142094; 3065927\t\tGO:0005737; GO:0005829; GO:0005576; GO:0005634; GO:0045296; GO:0042802; GO:0051219; GO:0019904; GO:0019901; GO:0061436; GO:0008630; GO:0031424; GO:0003334; GO:0030216; GO:0043154; GO:0010839; GO:0030307; GO:0045606; GO:0046827; GO:0051726; GO:0000079; GO:0010482; GO:0001836; GO:0043588\t\t\tMm.44482\tENSMUSG00000047281\tENSMUST00000057311\tENSMUSP00000050374\t207743\t10090.ENSMUSP00000050374\tmmu:55948\r\n-P68254\t1433T_MOUSE\t22630\tNP_035869.1\t68566157; 74226957; 74204655; 6756039; 51593617; 55153870\t\tGO:0005737; GO:0005829; GO:0032991; GO:0071889; GO:0042802; GO:0044325; GO:0008022; GO:0019904; GO:0047485; GO:0034766; GO:0045892; GO:0006605; GO:0007165; GO:0007264\t\t\tMm.289630\tENSMUSG00000076432\tENSMUST00000049531; ENSMUST00000103002\tENSMUSP00000106602; ENSMUSP00000100067\t204622\t10090.ENSMUSP00000100067\tmmu:22630\r\n-P63101\t1433Z_MOUSE\t22631\tNP_001240734.1; NP_001240735.1; NP_035870.1; XP_011243654.1\t74147004; 29748002; 74189019; 1304166; 1841387; 59808984; 74219475; 359385696; 74216901; 52000885; 1526539; 74207182; 1711130; 755550334; 148676867; 359385698; 26350495; 6756041; 74187552\t\tGO:0031252; GO:0005829; GO:0042629; GO:0042470; GO:0005739; GO:0005634; GO:0048471; GO:0014069; GO:0032991; GO:0045296; GO:0042802; GO:0044325; GO:0019904; GO:0019901; GO:0044877; GO:0008134; GO:0031625; GO:0051683; GO:0090168; GO:0002553; GO:0006605; GO:0006626; GO:0010941; GO:0042493\tJC5384\t\tMm.3360\tENSMUSG00000022285\tENSMUST00000022894; ENSMUST00000110361; ENSMUST00000110362\tENSMUSP00000022894; ENSMUSP00000105990; ENSMUSP00000105991\t204623\t10090.ENSMUSP00000022894\tmmu:22631\r\n-A2AIG8\t1A1L1_'..b'31582.1\t6680798; 26334293; 81897249\t\tGO:0005576; GO:0008083\t\t\tMm.385759\t\t\t\t\t\tmmu:12161\r\n-Q9CWI0\tQ9CWI0_MOUSE\t\t\t12846328; 81880937\t\tGO:0000145; GO:0015031; GO:0006904\t\t\tMm.265512\t\t\t\t\t\t\r\n-A2ICG8\tA2ICG8_MOUSE\t\t\t122938530\t\tGO:0005634; GO:0003700; GO:0043565; GO:0003707; GO:0008270; GO:0006351\t\t\tMm.202383\t\t\t\t\t\t\r\n-Q85ZX0\tQ85ZX0_MOUSE\t224754\tNP_808303.1\t81866203; 28822392; 29244032\t\tGO:0016021\t\t\tMm.246582\t\t\t\t\t\tmmu:224754\r\n-D0ESZ5\tD0ESZ5_MOUSE\t\t\t260751602\t\tGO:0005615\t\t\tMm.250422\t\t\t\t\t\t\r\n-Q8C8Y6\tQ8C8Y6_MOUSE\t16522\tNP_034736.2\t26336276; 81899395; 71051587\t\tGO:0016021; GO:0015467; GO:0034765\t\t\tMm.328720\t\t\t\t\t\tmmu:16522\r\n-A0A5E3\tA0A5E3_MOUSE\t\t\t30749862; 30749865; 77415379; 31615369; 31615371\t1HQ4:A; 1HQ4:C; 1OB1:A; 1OB1:D\t\t\t\t\t\t\t\t\t\t\r\n-A0PJ96\tA0PJ96_MOUSE\t\t\t118600394\t\tGO:0005874; GO:0008017; GO:0000226; GO:0007399\t\t\tMm.4173; Mm.474609; Mm.474896\t\t\t\t\t\t\r\n-B2RQ61\tB2RQ61_MOUSE\t\t\t187950779\t\t\t\t\tMm.358882\t\t\t\t\t\t\r\n-Q9CUR1\tQ9CUR1_MOUSE\t\t\t12853126; 81904029\t\t\t\t\tMm.235716\t\t\t\t\t\t\r\n-A0A0U1RNG9\tA0A0U1RNG9_MOUSE\t\t\t\t\tGO:0004842\t\t\t\tENSMUSG00000030451\tENSMUST00000205678\tENSMUSP00000145560\t\t\t\r\n-A0A0G2JE37\tA0A0G2JE37_MOUSE\t\t\t\t\tGO:0016021; GO:0004930; GO:0007166\t\t\t\tENSMUSG00000028184\tENSMUST00000197348\tENSMUSP00000142618\t\t\t\r\n-A0A0G2JE89\tA0A0G2JE89_MOUSE\t\t\t\t\tGO:0005783; GO:0016021; GO:0055037; GO:0005524; GO:0000287; GO:0004012\t\t\t\tENSMUSG00000037400\tENSMUST00000198599\tENSMUSP00000142676\t\t\t\r\n-A0A0G2JFP1\tA0A0G2JFP1_MOUSE\t\t\t\t\tGO:0005813; GO:0005929; GO:0016020; GO:0046983; GO:0003382; GO:1903445; GO:1901214\t\t\t\tENSMUSG00000029392\tENSMUST00000199766\tENSMUSP00000143250\t\t\t\r\n-A0A0G2JGM8\tA0A0G2JGM8_MOUSE\t99633\tNP_001074767.1; XP_011238625.1\t755504845; 124486821\t\tGO:0016021; GO:0030246; GO:0004930; GO:0007166\t\t\tMm.331434; Mm.389502; Mm.462301; Mm.9776\tENSMUSG00000028184\tENSMUST00000197567\tENSMUSP00000143626\t\t\tmmu:99633\r\n-A0A0G2JGQ1\tA0A0G2JGQ1_MOUSE\t\t\t\t\tGO:0016021\t\t\t\tENSMUSG00000041468\tENSMUST00000200112\tENSMUSP00000143653\t\t\t\r\n-A0A0N4SVF1\tA0A0N4SVF1_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000042129\tENSMUST00000204203\tENSMUSP00000145076\t\t\t\r\n-A0A0J9YVI3\tA0A0J9YVI3_MOUSE\t\t\t\t\tGO:0005634; GO:0005667; GO:0017053; GO:0003700; GO:0051287; GO:0016616; GO:0008134; GO:0000122; GO:0050872\t\t\t\tENSMUSG00000037373\tENSMUST00000200899\tENSMUSP00000144672\t\t\t\r\n-A0A0J9YU72\tA0A0J9YU72_MOUSE\t\t\t\t\tGO:0043679; GO:0016021; GO:0042734; GO:0008021; GO:0017075; GO:1905513; GO:0035544; GO:0009607; GO:0031629\t\t\t\tENSMUSG00000045114\tENSMUST00000202045\tENSMUSP00000144042\t\t\t\r\n-A0A0U1RNW9\tA0A0U1RNW9_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000042978\tENSMUST00000206424\tENSMUSP00000145733\t\t\t\r\n-A0A0U1RQ02\tA0A0U1RQ02_MOUSE\t\t\t\t\tGO:0016020; GO:0007165\t\t\t\tENSMUSG00000030742\tENSMUST00000205642\tENSMUSP00000146191\t\t\t\r\n-A0A0R4J045\tA0A0R4J045_MOUSE\t224823\tNP_659106.1\t21450075; 15030015\t\tGO:0005730; GO:0000469; GO:0042274\t\t\tMm.45101\tENSMUSG00000023971\tENSMUST00000024766\tENSMUSP00000024766\t\t\tmmu:224823\r\n-A0A0R4J075\tA0A0R4J075_MOUSE\t171531\tNP_443748.2\t13647045; 87080831\t\tGO:0030425; GO:0048471; GO:0046872; GO:0017022; GO:0030674; GO:0017137; GO:0006886\t\t\tMm.105208\tENSMUSG00000026303\tENSMUST00000027528\tENSMUSP00000027528\t\t\tmmu:171531\r\n-A0A0R4J1Y8\tA0A0R4J1Y8_MOUSE\t18044\tNP_001334331.1\t1104876364; 200042\t\tGO:0016602; GO:0003677; GO:0003700\t\t\tMm.4929\tENSMUSG00000023994\tENSMUST00000159063\tENSMUSP00000124404\t\t\t\r\n-A0A140LHG0\tA0A140LHG0_MOUSE\t\t\t\t\tGO:0032433; GO:0030117; GO:0019901\t\t\t\tENSMUSG00000060279\tENSMUST00000208405\tENSMUSP00000146398\t\t\t\r\n-A0A140LHS3\tA0A140LHS3_MOUSE\t\t\t\t\tGO:0005634; GO:0000978; GO:0001077; GO:0071277\t\t\t\tENSMUSG00000003545\tENSMUST00000208505\tENSMUSP00000146525\t\t\t\r\n-A0A140LJ76\tA0A140LJ76_MOUSE\t\t\t\t\tGO:0005576; GO:0042802; GO:0071773; GO:0090336; GO:0010628; GO:0070352\t\t\t\tENSMUSG00000048834\tENSMUST00000207256\tENSMUSP00000147108\t\t\t\r\n-A0A1C7CYV2\tA0A1C7CYV2_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000037101\tENSMUST00000126172\tENSMUSP00000122383\t\t\t\r\n-A0A1L1SQK8\tA0A1L1SQK8_MOUSE\t\t\t\t\tGO:0016021\t\t\t\tENSMUSG00000001943\tENSMUST00000213699\tENSMUSP00000149098\t\t\t\r\n-A0A1L1SUU4\tA0A1L1SUU4_MOUSE\t\t\t\t\tGO:0016021; GO:0015031\t\t\t\tENSMUSG00000040188\tENSMUST00000216986\tENSMUSP00000150920\t\t\t\r\n' |
| b |
| diff -r 1e45ea50f145 -r 5252bbcfbdd7 tool-data/Human_id_mapping_09-05-2019.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/Human_id_mapping_09-05-2019.tsv Fri May 10 10:38:46 2019 -0400 |
| b |
| b'@@ -0,0 +1,171064 @@\n+UniProt-AC\tUniProt-AC_reviewed\tUniProt-ID\tGeneID\tRefSeq\tGI\tPDB\tGO\tPIR\tMIM\tUniGene\tEnsembl_Gene\tEnsembl_Transcript\tEnsembl_Protein\tneXtProt\tBioGrid\tSTRING\tKEGG\r\n+P31946\tP31946\t1433B_HUMAN\t7529\tNP_003395.1; NP_647539.1; XP_016883528.1\t4507949; 377656702; 67464628; 1345590; 1034625756; 21328448; 377656701; 67464627; 78101741\t2BQ0:A; 2BQ0:B; 2C23:A; 4DNK:A; 4DNK:B; 5N10:A; 5N10:B; 6A5Q:A; 6A5Q:B; 6A5Q:C; 6BYK:A; 6BYK:B; 6BYK:C; 6BYK:D; 6GN0:A; 6GN0:B; 6GN0:C; 6GN0:D; 6GN8:A; 6GN8:B; 6GNJ:A; 6GNJ:B; 6GNK:A; 6GNK:B; 6GNN:A; 6HEP:A; 6HEP:B; 6HEP:C; 6HEP:D\tGO:0005737; GO:0005829; GO:0070062; GO:0005925; GO:0042470; GO:0016020; GO:0005739; GO:0005634; GO:0048471; GO:0017053; GO:0005774; GO:0045296; GO:0019899; GO:0042826; GO:0042802; GO:0051219; GO:0050815; GO:0008022; GO:0019904; GO:0044877; GO:0051220; GO:0035329; GO:0000165; GO:0061024; GO:0045744; GO:0035308; GO:0045892; GO:0043085; GO:1900740; GO:0051291; GO:0006605; GO:0043488; GO:0016032\tS34755\t601289\t\tENSG00000166913\tENST00000353703; ENST00000372839\tNX_P31946\tNX_P31946\t113361\t9606.ENSP00000361930\thsa:7529\r\n+P62258\tP62258\t1433E_HUMAN\t7531\tNP_006752.1\t374074368; 62131678; 67464424; 194379794; 221045758; 5803225; 374074366; 51702210\t2BR9:A; 3UAL:A; 3UBW:A; 6EIH:A\tGO:0090724; GO:0005737; GO:0005829; GO:0070062; GO:0005925; GO:0098978; GO:0005871; GO:0042470; GO:0016020; GO:0005739; GO:0005634; GO:0045296; GO:0005246; GO:0019899; GO:0042826; GO:0042802; GO:0044325; GO:0023026; GO:0051219; GO:0050815; GO:0015459; GO:0019904; GO:0046982; GO:0003723; GO:0097110; GO:0031625; GO:0034605; GO:0021987; GO:0097711; GO:0000086; GO:0035329; GO:0021766; GO:0035556; GO:0000165; GO:0061024; GO:0086013; GO:1905913; GO:1901020; GO:0043154; GO:1902309; GO:0001764; GO:0046827; GO:1900740; GO:0034504; GO:0006605; GO:1900034; GO:0051480; GO:0010389; GO:0086091; GO:0003064; GO:0060306; GO:0099072; GO:1901016; GO:0021762; GO:0016032\tA61235; I38947\t605066\t\tENSG00000108953; ENSG00000274474\tENST00000264335; ENST00000571732; ENST00000616643; ENST00000627231\tNX_P62258\tNX_P62258\t113363\t9606.ENSP00000264335\thsa:7531\r\n+Q04917\tQ04917\t1433F_HUMAN\t7533\tNP_003396.1\t4507951; 437363; 83754686; 83754699; 83754700; 1345593; 83754684; 83754685; 28862; 83754683\t2C63:A; 2C63:B; 2C63:C; 2C63:D; 2C74:A; 2C74:B\tGO:0005737; GO:0005829; GO:0070062; GO:0098978; GO:0014704; GO:0005739; GO:0005886; GO:0098793; GO:0003779; GO:0019899; GO:0035259; GO:0042802; GO:0005159; GO:0044325; GO:0019904; GO:0046982; GO:0017080; GO:0006713; GO:0042921; GO:0006886; GO:0086010; GO:0061024; GO:0050774; GO:1900740; GO:0045893; GO:0045664; GO:2000649; GO:0002028; GO:0048167; GO:0021762\tS34756; S38509; S38532\t113508\t\tENSG00000128245\tENST00000248975\tNX_Q04917\tNX_Q04917\t113365\t9606.ENSP00000248975\thsa:7533\r\n+P61981\tP61981\t1433G_HUMAN\t7532\tNP_036611.2\t6016838; 380764684; 635576381; 82407956; 82407958; 550545213; 635576377; 380765197; 82407950; 550545214; 119592210; 1006588564; 1006588561; 635576379; 21464101; 82407952; 48428721; 5726310; 550545212; 635576378; 1006588559; 18088513; 49456805; 1006588565; 550545215; 1006588558; 49456763; 1006588562; 82407948; 82407954; 635576376; 635576380\t2B05:A; 2B05:B; 2B05:C; 2B05:D; 2B05:E; 2B05:F; 3UZD:A; 4E2E:A; 4J6S:A; 4J6S:B; 4J6S:C; 4J6S:D; 4O46:A; 4O46:B; 4O46:C; 4O46:D; 4O46:E; 4O46:F; 5D3E:A; 5D3E:B; 5D3E:E; 5D3E:F; 5D3E:I; 5D3E:J; 6A5S:A; 6A5S:B; 6A5S:D; 6A5S:G; 6BYJ:A; 6BYJ:B; 6BYJ:C; 6BYJ:D; 6BYJ:E; 6BYJ:F; 6BYL:A; 6BYL:B; 6BYL:C; 6BYL:D; 6BYL:E; 6BYL:F; 6BZD:A; 6BZD:B; 6BZD:C; 6BZD:D; 6FEL:A; 6FEL:B; 6FEL:C; 6FEL:D; 6GKF:A; 6GKF:B; 6GKF:C; 6GKF:D; 6GKF:E; 6GKF:F; 6GKF:G; 6GKF:H; 6GKG:A; 6GKG:B; 6GKG:C; 6GKG:D; 6GKG:E; 6GKG:F; 6GKG:G; 6GKG:H\tGO:0005829; GO:0070062; GO:0005925; GO:0016020; GO:0005739; GO:0098793; GO:0042802; GO:0005159; GO:0019904; GO:0005080; GO:0008426; GO:0030971; GO:0003723; GO:0032869; GO:0097711; GO:0000086; GO:0061024; GO:0006469; GO:1900740; GO:0006605; GO:0010389; GO:0045664; GO:0009966; GO:0048167\t\t605356; 617665\t\tENSG00000170027\tENST00000307630\tNX_P61981\tNX'..b'\n+A0A343UBE2\t\tA0A343UBE2_HUMAN\t\t\t1341385077\t\tGO:0016021; GO:0005743; GO:0045277; GO:0004129; GO:0020037; GO:0046872; GO:0009060; GO:0006119\t\t\t\t\t\t\t\t\t\t\r\n+A0A1B0GW03\t\tA0A1B0GW03_HUMAN\t\t\t\t\t\t\t\t\tENSG00000143850\tENST00000564627\tENSP00000490720\t\t\t\t\r\n+A0A1B0GWH1\t\tA0A1B0GWH1_HUMAN\t\t\t\t\tGO:0016021; GO:0005230; GO:0004888\t\t\t\tENSG00000175344\tENST00000637519\tENSP00000490924\t\t\t\t\r\n+U5L326\t\tU5L326_HUMAN\t\t\t545397061\t\tGO:0016021; GO:0005743; GO:0045263; GO:0015078; GO:0015986\t\t\t\t\t\t\t\t\t\t\r\n+A0A0A7C7H4\t\tA0A0A7C7H4_HUMAN\t\t\t628821518\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A0A7CAH8\t\tA0A0A7CAH8_HUMAN\t\t\t628822831\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n+A0A186VNE1\t\tA0A186VNE1_HUMAN\t\t\t844316439\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n+Q8N7Y7\t\tQ8N7Y7_HUMAN\t\t\t21757324\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A0F6MY87\t\tA0A0F6MY87_HUMAN\t\t\t597501044\t\t\t\t\t\t\t\t\t\t\t\t\r\n+L0R542\t\tL0R542_HUMAN\t\t\t440576005\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A0E3DDA8\t\tA0A0E3DDA8_HUMAN\t\t\t631899380\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A0U1RQL4\t\tA0A0U1RQL4_HUMAN\t\t\t\t\t\t\t\t\tENSG00000160185\tENST00000635189\tENSP00000489058\t\t\t\t\r\n+A0A2R8YCW3\t\tA0A2R8YCW3_HUMAN\t\t\t\t\t\t\t\t\tENSG00000130856\tENST00000645888\tENSP00000494034\t\t\t\t\r\n+A0A3B3ISV9\t\tA0A3B3ISV9_HUMAN\t\t\t\t\tGO:0003676\t\t\t\tENSG00000117419\tENST00000649995\tENSP00000497624\t\t\t\t\r\n+C6GLV5\t\tC6GLV5_HUMAN\t\t\t242381001\t\t\t\t\t\t\t\t\t\t\t\t\r\n+B7Z8D1\t\tB7Z8D1_HUMAN\t\t\t221044480\t\t\t\t\t\t\t\t\t\t\t\t\r\n+G1EPR9\t\tG1EPR9_HUMAN\t\t\t341838790\t\t\t\t\t\t\t\t\t\t\t\t\r\n+B0LXF6\t\tB0LXF6_HUMAN\t\t\t166204135\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A059QUY0\t\tA0A059QUY0_HUMAN\t\t\t545755643\t\tGO:0016021; GO:0005743; GO:0055114\t\t\t\t\t\t\t\t\t\t\r\n+F1AHJ1\t\tF1AHJ1_HUMAN\t\t\t322835725\t\t\t\t\t\t\t\t\t\t\t\t\r\n+F4NBX3\t\tF4NBX3_HUMAN\t\t\t329581895\t\tGO:0016021\t\t\t\t\t\t\t\t\t\t\r\n+M9PNN8\t\tM9PNN8_HUMAN\t\t\t449332030\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A059QQR4\t\tA0A059QQR4_HUMAN\t\t\t545754081\t\tGO:0016021; GO:0005739; GO:0004129; GO:0019646\t\t\t\t\t\t\t\t\t\t\r\n+A0A059RDU1\t\tA0A059RDU1_HUMAN\t\t\t545762804\t\tGO:0016021; GO:0031966; GO:0070469; GO:0016651; GO:0042773\t\t\t\t\t\t\t\t\t\t\r\n+A0A186VN48\t\tA0A186VN48_HUMAN\t\t\t844316164\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A0U4ARJ3\t\tA0A0U4ARJ3_HUMAN\t\t\t972988098\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A0N7A4T4\t\tA0A0N7A4T4_HUMAN\t\t\t723439372\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n+A0A0P0HNE9\t\tA0A0P0HNE9_HUMAN\t\t\t939232230\t\tGO:0016021; GO:0005886; GO:0004980\t\t\t\t\t\t\t\t\t\t\r\n+A0A2U7MZA8\t\tA0A2U7MZA8_HUMAN\t\t\t1202137580\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n+A0A343GTV3\t\tA0A343GTV3_HUMAN\t\t\t1228320324\t\tGO:0016021; GO:0031966; GO:0070469; GO:0016651; GO:0042773\t\t\t\t\t\t\t\t\t\t\r\n+A0A346LZW0\t\tA0A346LZW0_HUMAN\t\t\t1464230248\t\tGO:0016021; GO:0005743; GO:0070469; GO:0004129; GO:0020037; GO:0046872; GO:0009060; GO:0006119\t\t\t\t\t\t\t\t\t\t\r\n+A0A386NC05\t\tA0A386NC05_HUMAN\t\t\t1484127305\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A3B3IT61\t\tA0A3B3IT61_HUMAN\t\t\t384096922\t\tGO:0046872\t\t\t\tENSG00000129170\tENST00000648719\tENSP00000497633\t\t\t\t\r\n+A0A3B3ISH5\t\tA0A3B3ISH5_HUMAN\t\t\t\t\t\t\t\t\tENSG00000187498\tENST00000649484\tENSP00000497355\t\t\t\t\r\n+A0A3B3ITT4\t\tA0A3B3ITT4_HUMAN\t\t\t\t\tGO:0047045; GO:0030539; GO:0061370\t\t\t\tENSG00000130948\tENST00000648799\tENSP00000498039\t\t\t\t\r\n+A0A023QXG8\t\tA0A023QXG8_HUMAN\t\t\t614528318\t\tGO:0016021; GO:0005743; GO:0055114\t\t\t\t\t\t\t\t\t\t\r\n+F8SY65\t\tF8SY65_HUMAN\t\t\t338223266\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n+I6NS60\t\tI6NS60_HUMAN\t\t\t375174267\t\t\t\t\t\t\t\t\t\t\t\t\r\n+M9P9Y3\t\tM9P9Y3_HUMAN\t\t\t429508971\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\t\r\n+A0A090N8Z3\t\tA0A090N8Z3_HUMAN\t\t\t51105896\t\tGO:0016021; GO:0005524; GO:0004672\t\t\t\t\t\t\t\t\t\t\r\n+A0A1B0GU39\t\tA0A1B0GU39_HUMAN\t\t\t\t\t\t\t\t\tENSG00000128973\tENST00000636876\tENSP00000489950\t\t\t\t\r\n+A0A1B0GUE6\t\tA0A1B0GUE6_HUMAN\t\t\t\t\t\t\t\t\tENSG00000267710\tENST00000593116\tENSP00000490076\t\t\t\t\r\n+E7E3U7\t\tE7E3U7_HUMAN\t\t\t315114574\t\tGO:0016021; GO:0005743; GO:0045263; GO:0015078; GO:0015986\t\t\t\t\t\t\t\t\t\t\r\n+A4D2M2\t\tA4D2M2_HUMAN\t\t\t51094476\t\t\t\t\t\t\t\t\t\t\t\t\r\n+A9X3Y2\t\tA9X3Y2_HUMAN\t\t\t87137304\t\tGO:0016301\t\t\t\t\t\t\t\t\t\t\r\n+A0A075C9B0\t\tA0A075C9B0_HUMAN\t\t\t545749586\t\tGO:0016021; GO:0005743; GO:0045263; GO:0015078; GO:0015986\t\t\t\t\t\t\t\t\t\t\r\n+A0A059RL82\t\tA0A059RL82_HUMAN\t\t\t545766497\t\tGO:0016021; GO:0005743; GO:0045263; GO:0015078; GO:0015986\t\t\t\t\t\t\t\t\t\t\r\n+D3U3M9\t\tD3U3M9_HUMAN\t\t\t224995005\t\t\t\t\t\t\t\t\t\t\t\t\r\n+L7WMV4\t\tL7WMV4_HUMAN\t\t\t443302586\t\t\t\t\t\t\t\t\t\t\t\t\r\n+L8E9R0\t\tL8E9R0_HUMAN\t\t\t444738033\t\t\t\t\t\t\t\t\t\t\t\t\r\n' |
| b |
| diff -r 1e45ea50f145 -r 5252bbcfbdd7 tool-data/Mouse_id_mapping_09-05-2019.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/Mouse_id_mapping_09-05-2019.tsv Fri May 10 10:38:46 2019 -0400 |
| b |
| b'@@ -0,0 +1,85391 @@\n+UniProt-AC\tUniProt-AC_reviewed\tUniProt-ID\tGeneID\tRefSeq\tGI\tPDB\tGO\tPIR\tMIM\tUniGene\tEnsembl_Gene\tEnsembl_Transcript\tEnsembl_Protein\tBioGrid\tSTRING\tKEGG\r\n+Q9CQV8\tQ9CQV8\t1433B_MOUSE\t54401\tNP_061223.2; XP_006499972.1\t1009083986; 409974018; 74219534; 31543974; 3065925; 568917832; 18202836; 74191394\t4GNT:A; 5F74:A; 5WFU:A; 5WFU:B; 5WFU:C; 5WFU:D; 5WFX:A; 5WFX:B\tGO:0005737; GO:0005829; GO:0042470; GO:0005634; GO:0048471; GO:0032991; GO:0017053; GO:0019899; GO:0042826; GO:0042802; GO:0051219; GO:0050815; GO:0008022; GO:0019904; GO:0044877; GO:0051220; GO:0045744; GO:0035308; GO:0045892; GO:0043085; GO:0051291; GO:0006605\t\t\t\tENSMUSG00000018326\tENSMUST00000018470\tENSMUSP00000018470\t207648\t10090.ENSMUSP00000018470\tmmu:54401\r\n+P62259\tP62259\t1433E_MOUSE\t22627\tNP_033562.3\t60391192; 226874906\t\tGO:0030424; GO:0090724; GO:0005737; GO:0005829; GO:0098978; GO:0005871; GO:0042470; GO:0005739; GO:0005634; GO:0005886; GO:0045202; GO:0005246; GO:0019899; GO:0042826; GO:0042802; GO:0044325; GO:0051219; GO:0050815; GO:0015459; GO:0019904; GO:0046982; GO:0044877; GO:0097110; GO:0031625; GO:0034605; GO:0021987; GO:0021766; GO:0000165; GO:1905913; GO:1901020; GO:1902309; GO:0035308; GO:0001764; GO:0046827; GO:0034504; GO:0006605; GO:0051480; GO:0060306; GO:0099072; GO:1901016\tI48337\t\t\tENSMUSG00000020849\tENSMUST00000067664\tENSMUSP00000070993\t204619\t10090.ENSMUSP00000070993\tmmu:22627\r\n+P68510\tP68510\t1433F_MOUSE\t22629\tNP_035868.1\t74226056; 17976969; 1526541; 74139366; 74140682; 3335652; 55976655; 1354808; 26346472; 74214318; 148705461; 38181914; 14198255; 6756037\t5YQG:A; 5YQG:B; 5YQG:C; 5YQG:D\tGO:0005737; GO:0005829; GO:0098978; GO:0014704; GO:0005886; GO:0098793; GO:0045202; GO:0003779; GO:0019899; GO:0035259; GO:0042802; GO:0044325; GO:0019904; GO:0046982; GO:0017080; GO:0007010; GO:0006713; GO:0042921; GO:0006886; GO:0086010; GO:0043066; GO:0050774; GO:0045893; GO:0007088; GO:2000649; GO:0002028\t\t\t\tENSMUSG00000018965\tENSMUST00000019109\tENSMUSP00000019109\t204621\t10090.ENSMUSP00000019109\tmmu:22629\r\n+P61982\tP61982\t1433G_MOUSE\t22628\tNP_061359.2\t74215924; 31543976; 48428722; 3065929\t\tGO:0005829; GO:0043209; GO:0098793; GO:0045202; GO:0031982; GO:0003779; GO:0042802; GO:0005159; GO:0019904; GO:0005080; GO:0030971; GO:0032869; GO:0006605; GO:0045664; GO:0048167\t\t\t\tENSMUSG00000051391\tENSMUST00000055808; ENSMUST00000198270\tENSMUSP00000051223; ENSMUSP00000143631\t204620\t10090.ENSMUSP00000051223\tmmu:22628\r\n+O70456\tO70456\t1433S_MOUSE\t55948\tNP_061224.2\t148698109; 18202125; 74138801; 134023662; 338817846; 74142094; 3065927\t\tGO:0005737; GO:0005829; GO:0005576; GO:0005634; GO:0042802; GO:0051219; GO:0019904; GO:0019901; GO:0061436; GO:0008630; GO:0031424; GO:0003334; GO:0030216; GO:0043154; GO:0010839; GO:0030307; GO:0045606; GO:0046827; GO:0051726; GO:0000079; GO:0010482; GO:0001836; GO:0043588\t\t\t\tENSMUSG00000047281\tENSMUST00000057311\tENSMUSP00000050374\t207743\t10090.ENSMUSP00000050374\tmmu:55948\r\n+P68254\tP68254\t1433T_MOUSE\t22630\tNP_035869.1\t68566157; 74226957; 74204655; 6756039; 51593617; 55153870\t\tGO:0005737; GO:0005829; GO:0032991; GO:0045202; GO:0071889; GO:0042802; GO:0044325; GO:0008022; GO:0019904; GO:0047485; GO:0034766; GO:0045892; GO:0006605; GO:0007165; GO:0007264\t\t\t\tENSMUSG00000076432\tENSMUST00000103002; ENSMUST00000135088; ENSMUST00000155480\tENSMUSP00000100067; ENSMUSP00000123605; ENSMUSP00000117118\t204622\t10090.ENSMUSP00000100067\tmmu:22630\r\n+P63101\tP63101\t1433Z_MOUSE\t22631\tNP_001240734.1; NP_001240735.1; NP_035870.1; XP_011243654.1\t74147004; 29748002; 74189019; 1304166; 1841387; 59808984; 74219475; 359385696; 74216901; 52000885; 1526539; 74207182; 1711130; 755550334; 148676867; 359385698; 26350495; 6756041; 74187552\t\tGO:0031252; GO:0005829; GO:0098978; GO:0098686; GO:0042629; GO:0042470; GO:0005739; GO:0005634; GO:0048471; GO:0014069; GO:0032991; GO:0042802; GO:0044325; GO:0019904; GO:0019901; GO:0044877; GO:0008134; GO:0031625; GO:0051683; GO:0090168; GO:0002553; GO:0006605; GO:0006626; GO:0010941; GO:0090128; GO:0042493; GO:0008039\tJC5'..b'0156142\t\t\t\r\n+A0A2Z4T1W8\t\tA0A2Z4T1W8_MOUSE\t\t\t1417962601\t\tGO:0042613; GO:0019882; GO:0006955\t\t\t\t\t\t\t\t\t\r\n+A0A1B0GR24\t\tA0A1B0GR24_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000030649\tENSMUST00000209334\tENSMUSP00000147346\t\t\t\r\n+A0A1B0GR28\t\tA0A1B0GR28_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000110234\tENSMUST00000210312\tENSMUSP00000147351\t\t\t\r\n+A0A1D5RM23\t\tA0A1D5RM23_MOUSE\t\t\t\t\tGO:0005849; GO:0016787; GO:0003729; GO:0006378\t\t\t\tENSMUSG00000031754\tENSMUST00000212981\tENSMUSP00000148597\t\t\t\r\n+E0CYA5\t\tE0CYA5_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000020077\tENSMUST00000160643\tENSMUSP00000124365\t\t\t\r\n+A0A075B5S3\t\tA0A075B5S3_MOUSE\t\t\t\t\tGO:0009897; GO:0042571; GO:0003823; GO:0034987; GO:0050853; GO:0006958; GO:0042742; GO:0045087; GO:0006911; GO:0006910; GO:0050871\t\t\t\tENSMUSG00000076666\tENSMUST00000103475\tENSMUSP00000100256\t\t\t\r\n+E0CZ46\t\tE0CZ46_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000035495\tENSMUST00000129929\tENSMUSP00000125707\t\t\t\r\n+A0A286T4B5\t\tA0A286T4B5_MOUSE\t\t\t\t\tGO:0016021; GO:0005743; GO:0045277; GO:0004129; GO:0020037; GO:0046872; GO:0009060; GO:0006119\t\t\t\t\t\t\t\t\t\r\n+E0CYZ7\t\tE0CYZ7_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000022906\tENSMUST00000122870\tENSMUSP00000123736\t\t\t\r\n+E0CZ00\t\tE0CZ00_MOUSE\t\t\t\t\tGO:0016021\t\t\t\tENSMUSG00000003721\tENSMUST00000159125\tENSMUSP00000123729\t\t\t\r\n+O88534\t\tO88534_MOUSE\t\t\t81861495; 3288848\t\t\t\t\t\t\t\t\t\t\t\r\n+A0A075B696\t\tA0A075B696_MOUSE\t\t\t\t\tGO:0009897; GO:0042571; GO:0003823; GO:0034987; GO:0050853; GO:0006958; GO:0042742; GO:0045087; GO:0006911; GO:0006910; GO:0050871\t\t\t\tENSMUSG00000094164\tENSMUST00000178229\tENSMUSP00000136577\t\t\t\r\n+D6RE28\t\tD6RE28_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000004359\tENSMUST00000133724\tENSMUSP00000114328\t\t\t\r\n+A0A1L1SRA9\t\tA0A1L1SRA9_MOUSE\t\t\t\t\tGO:0003824\t\t\t\tENSMUSG00000063849\tENSMUST00000216365\tENSMUSP00000149389\t\t\t\r\n+A0A1L1STC1\t\tA0A1L1STC1_MOUSE\t\t\t\t\tGO:0003676\t\t\t\tENSMUSG00000032119\tENSMUST00000214660\tENSMUSP00000150281\t\t\t\r\n+A0A1W2P7X3\t\tA0A1W2P7X3_MOUSE\t\t\t\t\tGO:0004725\t\t\t\tENSMUSG00000044573\tENSMUST00000219697\tENSMUSP00000151833\t\t\t\r\n+A0A1Y7VLD2\t\tA0A1Y7VLD2_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000021090\tENSMUST00000221360\tENSMUSP00000152125\t\t\t\r\n+A0A1Y7VNH8\t\tA0A1Y7VNH8_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000042050\tENSMUST00000222679\tENSMUSP00000152429\t\t\t\r\n+D6RFP3\t\tD6RFP3_MOUSE\t\t\t\t\tGO:0016021\t\t\t\tENSMUSG00000047554\tENSMUST00000135565\tENSMUSP00000121078\t\t\t\r\n+D6RG66\t\tD6RG66_MOUSE\t\t\t\t\tGO:0034707; GO:0005254\t\t\t\tENSMUSG00000030428\tENSMUST00000153673\tENSMUSP00000115623\t\t\t\r\n+A0A0A6YXL9\t\tA0A0A6YXL9_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000026771\tENSMUST00000132827\tENSMUSP00000142047\t\t\t\r\n+B1AUB4\t\tB1AUB4_MOUSE\t\t\t\t\tGO:0005634; GO:0003700; GO:0008270; GO:0030221; GO:0030222; GO:0048821; GO:0030219\t\t\t\tENSMUSG00000031162\tENSMUST00000128449\tENSMUSP00000123620\t\t\t\r\n+A0A1B0GRI1\t\tA0A1B0GRI1_MOUSE\t\t\t\t\tGO:0016021; GO:0005886; GO:0004930; GO:0004984\t\t\t\tENSMUSG00000084262\tENSMUST00000210115\tENSMUSP00000147533\t\t\t\r\n+A2AP38\t\tA2AP38_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000023206\tENSMUST00000138856\tENSMUSP00000120539\t\t\t\r\n+F6TW36\t\tF6TW36_MOUSE\t\t\t\t\tGO:0005524\t\t\t\tENSMUSG00000021470\tENSMUST00000159957\tENSMUSP00000124912\t\t\t\r\n+F6XMH5\t\tF6XMH5_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000018548\tENSMUST00000154138\tENSMUSP00000118260\t\t\t\r\n+F6Z0L5\t\tF6Z0L5_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000090408\tENSMUST00000166353\tENSMUSP00000131993\t\t\t\r\n+F6ZZK0\t\tF6ZZK0_MOUSE\t\t\t\t\tGO:0031625; GO:0006511\t\t\t\tENSMUSG00000004364\tENSMUST00000167293\tENSMUSP00000126630\t\t\t\r\n+F6Q5V4\t\tF6Q5V4_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000023055\tENSMUST00000168112\tENSMUSP00000128307\t\t\t\r\n+F6QHF1\t\tF6QHF1_MOUSE\t\t\t\t\tGO:0042825; GO:0005524; GO:0042287; GO:0015433; GO:0046979; GO:0002479\t\t\t\tENSMUSG00000037321\tENSMUST00000171148\tENSMUSP00000130189\t\t\t\r\n+L7N254\t\tL7N254_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000079389\tENSMUST00000112779\tENSMUSP00000108399\t\t\t\r\n+E9QAY1\t\tE9QAY1_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000000916\tENSMUST00000170342\tENSMUSP00000128370\t\t\t\r\n+Q3UUP7\t\tQ3UUP7_MOUSE\t\t\t74209684\t\t\t\t\t\t\t\t\t\t\t\r\n+G3UXY7\t\tG3UXY7_MOUSE\t\t\t\t\tGO:0003824; GO:0043169; GO:0005975\t\t\t\tENSMUSG00000074264\tENSMUST00000174147\tENSMUSP00000133875\t\t\t\r\n+G3XA76\t\tG3XA76_MOUSE\t\t\t\t\t\t\t\t\tENSMUSG00000032423\tENSMUST00000172508\tENSMUSP00000133292\t\t\t\r\n+E0CX76\t\tE0CX76_MOUSE\t\t\t\t\tGO:0051087\t\t\t\tENSMUSG00000049792\tENSMUST00000162953\tENSMUSP00000124861\t\t\t\r\n' |
| b |
| diff -r 1e45ea50f145 -r 5252bbcfbdd7 tool-data/Rat_id_mapping_09-05-2019.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/Rat_id_mapping_09-05-2019.tsv Fri May 10 10:38:46 2019 -0400 |
| b |
| b'@@ -0,0 +1,36108 @@\n+UniProt-AC\tUniProt-AC_reviewed\tUniProt-ID\tGeneID\tRefSeq\tGI\tPDB\tGO\tPIR\tMIM\tUniGene\tEnsembl_Gene\tEnsembl_Transcript\tEnsembl_Protein\tBioGrid\tSTRING\tKEGG\r\n+P35213\tP35213\t1433B_RAT\t56011\tNP_062250.1\t1911805; 265428; 49904289; 9507243; 1345591; 149042981; 402524\t\tGO:0005737; GO:0005829; GO:0042470; GO:0005634; GO:0048471; GO:0032991; GO:0017053; GO:0042826; GO:0042802; GO:0050815; GO:0008022; GO:0019904; GO:0044877; GO:0051220; GO:0045744; GO:0035308; GO:0045892; GO:0043085; GO:0051291; GO:0006605\tA49023\t\t\tENSRNOG00000010945\tENSRNOT00000016981\tENSRNOP00000016981\t248554\t10116.ENSRNOP00000016981\trno:56011\r\n+P62260\tP62260\t1433E_RAT\t29753\tNP_113791.1\t487918; 149053422; 38648857; 13928824; 1469948; 61216932; 294504\t\tGO:0030424; GO:0090724; GO:0005737; GO:0005829; GO:0098978; GO:0005871; GO:0042470; GO:0005634; GO:0005886; GO:0045202; GO:0005246; GO:0019899; GO:0042826; GO:0042802; GO:0044325; GO:0050815; GO:0015459; GO:0019904; GO:0046982; GO:0008426; GO:0044877; GO:0097110; GO:0031625; GO:0034605; GO:0021987; GO:0021766; GO:0000165; GO:1905913; GO:1901020; GO:1902309; GO:0001764; GO:0046827; GO:0034504; GO:0006605; GO:0051480; GO:0060306; GO:0099072; GO:1901016; GO:0007165\tJX0341\t\t\tENSRNOG00000005290\tENSRNOT00000007100\tENSRNOP00000007100\t248364\t10116.ENSRNOP00000007100\trno:29753\r\n+P68511\tP68511\t1433F_RAT\t25576\tNP_037184.1\t51858611; 398155; 6981710; 55976637; 149047466\t\tGO:0005737; GO:0045202; GO:0019904; GO:0017080; GO:0086010; GO:2000649; GO:0002028\tA60031\t\t\tENSRNOG00000055471\tENSRNOT00000085735\tENSRNOP00000075701\t247607\t10116.ENSRNOP00000024388\trno:25576\r\n+P61983\tP61983\t1433G_RAT\t56010\tNP_062249.1; XP_006249246.2\t149063017; 402526; 48428718; 117558830; 265430; 1046854730; 9507245\t\tGO:0005737; GO:0098793; GO:0045202; GO:0031982; GO:0003779; GO:0030234; GO:0042802; GO:0005159; GO:0019904; GO:0005080; GO:0030971; GO:0032869; GO:0006605; GO:0045664; GO:0048167; GO:0007165\tB49023\t\t\tENSRNOG00000001436\tENSRNOT00000001954; ENSRNOT00000084730\tENSRNOP00000001954; ENSRNOP00000069671\t248553\t10116.ENSRNOP00000001954\trno:56010\r\n+P68255\tP68255\t1433T_RAT\t25577\tNP_037185.1\t402509; 149051000; 61216933; 6981712; 38383130\t\tGO:0005737; GO:0032991; GO:0045202; GO:0071889; GO:0042802; GO:0044325; GO:0008022; GO:0019904; GO:0047485; GO:0034766; GO:0045892; GO:0006605; GO:0007264\tI52647\t\t\tENSRNOG00000051650\tENSRNOT00000077786\tENSRNOP00000072011\t247608\t10116.ENSRNOP00000011501\trno:25577\r\n+P63102\tP63102\t1433Z_RAT\t25578\tNP_037143.2; XP_006241591.1\t62871703; 294506; 564359766; 62990183; 402511; 52000883; 68085421; 487920; 149066515; 1051270\t\tGO:0031252; GO:0042629; GO:0042470; GO:0005739; GO:0048471; GO:0014069; GO:0032991; GO:0019904; GO:0044877; GO:0002553; GO:0006626; GO:0042493\tJC2502; JC5232; S59915\t\t\tENSRNOG00000008195\tENSRNOT00000035628\tENSRNOP00000030885\t247609\t10116.ENSRNOP00000030885\trno:25578\r\n+P22282\tP22282\t22P1_RAT\t25030\tNP_036850.1\t112720; 205903; 7549742; 299360; 260883; 530167\t\tGO:0005829; GO:0005634; GO:0004869; GO:0030521\tA49304\t\t\t\t\t\t\t10116.ENSRNOP00000040184\trno:25030\r\n+P22283\tP22283\t22P2_RAT\t296229\tNP_954887.1\t41152508; 112721; 205905; 149041137; 56013; 72679563\t\tGO:0004869\tJT0616\t\t\t\t\t\t\t10116.ENSRNOP00000043921\trno:296229\r\n+Q80W83\tQ80W83\t2A5B_RAT\t309179\tNP_852044.1; XP_008758365.1\t31077118; 672039381; 81873316; 149062165; 60422755; 30575399\t\tGO:0005829; GO:0005634; GO:0000159; GO:0072542; GO:0071363; GO:0070317; GO:0071158; GO:0051091; GO:0010976; GO:0051388; GO:0031334; GO:0045944; GO:0006470; GO:0050730; GO:0031952; GO:0001932; GO:0010469; GO:0007165\t\t\t\tENSRNOG00000021025\tENSRNOT00000028542\tENSRNOP00000028542\t\t10116.ENSRNOP00000065720\trno:309179\r\n+Q4QQT4\tQ4QQT4\t2AAB_RAT\t315648\tNP_001020589.1\t81918149; 70794752; 67678118\t\tGO:0005737; GO:0045121; GO:0000159; GO:0019888; GO:0060561; GO:2001241; GO:0006470\t\t\t\tENSRNOG00000010922\tENSRNOT00000064290\tENSRNOP00000059428\t261094\t10116.ENSRNOP00000059428\trno:315648\r\n+P36876\tP36876\t2ABA_RAT\t117104\tNP_446451.1\t2346992; 206297; 206299; 16758910; 118764362; 543717; 149030346\t\tGO:000582'..b'SRNOP00000063466\t\t\t\r\n+D3Z9C7\t\tD3Z9C7_RAT\t\t\t\t\tGO:0048786; GO:0007416\t\t\t\tENSRNOG00000005726\tENSRNOT00000008637\tENSRNOP00000008637\t\t\t\r\n+D3ZM01\t\tD3ZM01_RAT\t\t\t\t\tGO:0005840; GO:0003735; GO:0006412\t\t\t\tENSRNOG00000029835\tENSRNOT00000040565\tENSRNOP00000041458\t\t10116.ENSRNOP00000041458\t\r\n+A0A0G2JT64\t\tA0A0G2JT64_RAT\t\t\t\t\tGO:0005829; GO:0005739; GO:0008106; GO:0004032; GO:0070401; GO:0052650; GO:0070402; GO:0016491; GO:0016918; GO:0019751; GO:0042574; GO:0042572\t\t\t\tENSRNOG00000009734\tENSRNOT00000078996\tENSRNOP00000068585\t\t\t\r\n+A0A0G2K375\t\tA0A0G2K375_RAT\t\t\t\t\tGO:0071013; GO:1990726; GO:0000932; GO:0046540; GO:0005688; GO:0006397\t\t\t\tENSRNOG00000011065\tENSRNOT00000014753\tENSRNOP00000072528\t\t\t\r\n+M0R6W4\t\tM0R6W4_RAT\t\t\t\t\tGO:0005840; GO:0003735; GO:0006412\t\t\t\tENSRNOG00000047774\tENSRNOT00000075169\tENSRNOP00000065173\t\t10116.ENSRNOP00000065173\t\r\n+Q63329\t\tQ63329_RAT\t\t\t81863292; 205302\t\t\tI52083\t\t\t\t\t\t\t\t\r\n+A0A0G2KA87\t\tA0A0G2KA87_RAT\t\t\t\t\tGO:0016021\t\t\t\tENSRNOG00000059973\tENSRNOT00000089152\tENSRNOP00000075304\t\t\t\r\n+A0A0G2K0W0\t\tA0A0G2K0W0_RAT\t\t\t\t\tGO:0016740; GO:0008299\t\t\t\tENSRNOG00000016767\tENSRNOT00000090387\tENSRNOP00000071601\t\t\t\r\n+A0A0G2K7Q4\t\tA0A0G2K7Q4_RAT\t\t\t\t\tGO:0000790; GO:0005667; GO:0003680; GO:0001228; GO:0070888; GO:0046982; GO:0042803; GO:0008134; GO:0007512; GO:0003278; GO:0003253; GO:0003219; GO:0060536; GO:0061325; GO:0060982; GO:0042733; GO:0001947; GO:0001701; GO:0010463; GO:0010667; GO:0043392; GO:0043433; GO:0010629; GO:0045668; GO:0042475; GO:0048935; GO:0010613; GO:0070374; GO:1900745; GO:2000764; GO:2000763; GO:2000679; GO:1903929; GO:0003266; GO:0034103; GO:0001967; GO:0048485; GO:0048538; GO:0043586; GO:0061032\t\t\t\tENSRNOG00000060448\tENSRNOT00000079552\tENSRNOP00000074299\t\t\t\r\n+A0A0G2KB77\t\tA0A0G2KB77_RAT\t\t\t\t\tGO:0022625; GO:0003735; GO:0002181\t\t\t\tENSRNOG00000022022\tENSRNOT00000030173\tENSRNOP00000075685\t\t\t\r\n+A0A0G2JUD5\t\tA0A0G2JUD5_RAT\t\t\t\t\t\t\t\t\tENSRNOG00000058517\tENSRNOT00000087468\tENSRNOP00000069056\t\t\t\r\n+A0A0G2K023\t\tA0A0G2K023_RAT\t\t\t\t\tGO:0005604; GO:0014002; GO:0000904; GO:0060041; GO:0007601\t\t\t\tENSRNOG00000059507\tENSRNOT00000090137\tENSRNOP00000071272\t\t10116.ENSRNOP00000013172\t\r\n+A0A0G2K1D1\t\tA0A0G2K1D1_RAT\t\t\t\t\t\t\t\t\tENSRNOG00000056854\tENSRNOT00000084127\tENSRNOP00000071794\t\t\t\r\n+A0A0H2UHJ2\t\tA0A0H2UHJ2_RAT\t\t\t\t\tGO:0005654; GO:0051726\t\t\t\tENSRNOG00000011379\tENSRNOT00000015472\tENSRNOP00000015472\t\t\t\r\n+A0A140GE10\t\tA0A140GE10_RAT\t\t\t1002159869\t\tGO:0016021; GO:0005743; GO:0045275; GO:0046872; GO:0008121; GO:0006122\t\t\t\t\t\t\t\t\t\r\n+D3ZDY2\t\tD3ZDY2_RAT\t\t\t\t\tGO:0005524; GO:0004672\t\t\t\tENSRNOG00000025037\tENSRNOT00000068040\tENSRNOP00000062510\t\t10116.ENSRNOP00000062510\t\r\n+F1LUG5\t\tF1LUG5_RAT\t\t\t\t\tGO:0016021\t\t\t\tENSRNOG00000004032\tENSRNOT00000005684\tENSRNOP00000005684\t\t10116.ENSRNOP00000005684\t\r\n+F1LNL5\t\tF1LNL5_RAT\t\t\t\t\tGO:0005912; GO:0031463; GO:0005737; GO:0030057; GO:0045109; GO:0051865; GO:2000312\t\t\t\tENSRNOG00000033372\tENSRNOT00000052120\tENSRNOP00000050815\t\t\t\r\n+F1LUQ9\t\tF1LUQ9_RAT\t\t\t\t\tGO:0005634; GO:0016538; GO:0006357\t\t\t\tENSRNOG00000038481\tENSRNOT00000058643\tENSRNOP00000055438\t\t10116.ENSRNOP00000055438\t\r\n+A0A1W2Q6P1\t\tA0A1W2Q6P1_RAT\t\t\t\t\t\t\t\t\tENSRNOG00000006498\tENSRNOT00000093515\tENSRNOP00000076349\t\t\t\r\n+D3Z9R6\t\tD3Z9R6_RAT\t\t\t\t\tGO:0009897; GO:0016021; GO:0005102; GO:0050776; GO:0050852\t\t\t\tENSRNOG00000000335\tENSRNOT00000039305\tENSRNOP00000034890\t\t10116.ENSRNOP00000034890\t\r\n+D3ZBP7\t\tD3ZBP7_RAT\t\t\t\t\tGO:0005783; GO:0008422; GO:0005975\t\t\t\tENSRNOG00000009193\tENSRNOT00000012308\tENSRNOP00000012308\t\t\t\r\n+D3ZJX6\t\tD3ZJX6_RAT\t\t\t\t\tGO:0020037; GO:0005506; GO:0016705\t\t\t\tENSRNOG00000009597\tENSRNOT00000057095\tENSRNOP00000053925\t\t\t\r\n+A0A0G2JWD2\t\tA0A0G2JWD2_RAT\t\t\t\t\tGO:0030424; GO:0043034; GO:0005829; GO:0043197; GO:0098978; GO:0005634; GO:0048471; GO:0005844; GO:0035770; GO:0003729; GO:0046982; GO:0042803; GO:0033592; GO:0007517; GO:2000637; GO:0006417\t\t\t\tENSRNOG00000051480\tENSRNOT00000088442\tENSRNOP00000069834\t\t\t\r\n+A0A0G2K206\t\tA0A0G2K206_RAT\t\t\t\t\t\t\t\t\tENSRNOG00000031483\tENSRNOT00000043247\tENSRNOP00000072058\t\t\t\r\n+E9PTU6\t\tE9PTU6_RAT\t\t\t\t\t\t\t\t\tENSRNOG00000011997\tENSRNOT00000015975\tENSRNOP00000015975\t\t\t\r\n' |
| b |
| diff -r 1e45ea50f145 -r 5252bbcfbdd7 tool_data_table_conf.xml.sample --- a/tool_data_table_conf.xml.sample Thu Mar 07 07:49:18 2019 -0500 +++ b/tool_data_table_conf.xml.sample Fri May 10 10:38:46 2019 -0400 |
| b |
| @@ -1,15 +1,15 @@ <tables> <!-- Location of ID Mapping files for id_converter--> <table name="proteore_id_mapping_Human" comment_char="#"> - <columns>id, name, species, value</columns> + <columns>id, release, name, species, value</columns> <file path="tool-data/proteore_id_mapping_Human.loc" /> </table> <table name="proteore_id_mapping_Mouse" comment_char="#"> - <columns>id, name, species, value</columns> + <columns>id, release, name, species, value</columns> <file path="tool-data/proteore_id_mapping_Mouse.loc" /> </table> <table name="proteore_id_mapping_Rat" comment_char="#"> - <columns>id, name, species, value</columns> + <columns>id, release, name, species, value</columns> <file path="tool-data/proteore_id_mapping_Rat.loc" /> </table> </tables> \ No newline at end of file |