| Previous changeset 8:b2c99f2353b6 (2025-07-15) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b |
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modified:
qiime2_core__tools__import.xml |
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| diff -r b2c99f2353b6 -r 52a1f79f0941 qiime2_core__tools__import.xml --- a/qiime2_core__tools__import.xml Tue Jul 15 22:08:00 2025 +0000 +++ b/qiime2_core__tools__import.xml Sat Nov 01 17:33:53 2025 +0000 |
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| b'@@ -6,17 +6,17 @@\n -->\n <!--\n This tool was automatically generated by:\n- q2galaxy (version: 2025.7.0)\n+ q2galaxy (version: 2025.10.0)\n for:\n- qiime2 (version: 2025.7.0)\n+ qiime2 (version: 2025.10.0)\n -->\n-<tool name="qiime2 tools import" id="qiime2_core__tools__import" version="2025.7.0+dist.h44bd78f6" profile="22.05" license="BSD-3-Clause">\n+<tool name="qiime2 tools import" id="qiime2_core__tools__import" version="2025.10.0+dist.hbfe50fe0" profile="22.05" license="BSD-3-Clause">\n <description>Import data into a QIIME 2 artifact</description>\n <xrefs>\n <xref type="bio.tools">qiime2</xref>\n </xrefs>\n <requirements>\n- <container type="docker">quay.io/qiime2/amplicon:2025.7</container>\n+ <container type="docker">quay.io/qiime2/amplicon:2025.10</container>\n </requirements>\n <command>q2galaxy run tools import \'$inputs\'</command>\n <configfiles>\n@@ -66,6 +66,7 @@\n <option value="BLASTDB">BLASTDB</option>\n <option value="Bowtie2Index">Bowtie2Index</option>\n <option value="BrackenDB">BrackenDB</option>\n+ <option value="DADA2BaseTransitionStats">DADA2BaseTransitionStats</option>\n <option value="DeblurStats">DeblurStats</option>\n <option value="Dist1D__ob__Multi__comma__ Independent__cb__">Dist1D[Multi, Independent]</option>\n <option value="Dist1D__ob__Multi__comma__ Matched__cb__">Dist1D[Multi, Matched]</option>\n@@ -127,6 +128,7 @@\n <option value="Kraken2DBReport">Kraken2DBReport</option>\n <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>\n <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option>\n+ <option value="NCBIAccessionIDs">NCBIAccessionIDs</option>\n <option value="PCoAResults">PCoAResults</option>\n <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option>\n <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option>\n@@ -147,6 +149,8 @@\n <option value="ReferenceDB__ob__EggnogProteinSequences__cb__">ReferenceDB[EggnogProteinSequences]</option>\n <option value="ReferenceDB__ob__Eggnog__cb__">ReferenceDB[Eggnog]</option>\n <option value="ReferenceDB__ob__NCBITaxonomy__cb__">ReferenceDB[NCBITaxonomy]</option>\n+ <option value="SRAFailedIDs">SRAFailedIDs</option>\n+ <option value="SRAMetadata">SRAMetadata</option>\n <option value="SampleData__ob__AlignmentMap__cb__">SampleData[AlignmentMap]</option>\n <option value="SampleData__ob__AlphaDiversity__cb__">SampleData[AlphaDiversity]</option>\n <option value="SampleData__ob__ArtificialGrouping__cb__">SampleData[ArtificialGrouping]</option>\n@@ -318,6 +322,19 @@\n </when>\n </conditional>\n </when>\n+ <when value="DADA2BaseTransitionStats">\n+ <conditional name="__q2galaxy__GUI__cond__format__">\n+ <param name="format" type="select" label="QIIME 2 file format to import from:">\n+ <option value="DADA2BaseTransitionStatsFormat" selected="true">DADA2 Base Transition Stats Format</option>\n+ </param>\n+ <when value="DADA2BaseTransitionStatsFormat">\n+ <section name="import" expanded="true" title="Import">\n+ <param name="name" type="hidden" value="__q2galaxy__::literal::None"/>\n+ <param name="data" type="data" format="data" help="This data should be formatted as a DADA2BaseTransitionStatsFormat. See the documentation below for more information."/>\n+ </section>\n+ </when>\n+ </conditional>\n+ </when>'..b'- PairedEndFastqManifestPhred64\n- - OrthologAnnotationDirFmt\n- - UchimeStatsFmt\n- - LSMatFormat\n- - PairedRNASequencesDirectoryFormat\n- - PairedEndFastqManifestPhred33V2\n- - MultiBowtie2IndexDirFmt\n- - DifferentialFormat\n- - ImmutableMetadataFormat\n- - Bowtie2IndexDirFmt\n- - AlignedDNAFASTAFormat\n- - PairedEndFastqManifestPhred64V2\n- - ContigSequencesDirFmt\n- - EMPPairedEndCasavaDirFmt\n- - EggnogProteinSequencesDirFmt\n- - CasavaOneEightSingleLanePerSampleDirFmt\n- - MixedCaseDNAFASTAFormat\n- - BooleanSeriesFormat\n+ - AlignedRNAFASTAFormat\n+ - ProteinsDirectoryFormat\n+ - MAGtoContigsFormat\n+ - DecontamScoreFormat\n+ - SingleEndFastqManifestPhred33V2\n - EMPSingleEndDirFmt\n - ProteinSingleProfileHmmDirectoryFmt\n - ProbabilitiesFormat\n- - DADA2StatsFormat\n+ - MixedCaseRNAFASTAFormat\n+ - ProteinFASTAFormat\n+ - MultiBAMDirFmt\n+ - BIOMV210Format\n+ - Kraken2DBReportFormat\n - ImportanceFormat\n- - GenesDirectoryFormat\n- - SeppReferenceDirFmt\n+ - SeedOrthologDirFmt\n - SingleEndFastqManifestPhred64V2\n- - SILVATaxonomyFormat\n- - BrackenDBDirectoryFormat\n- - BIOMV210Format\n+ - EMPPairedEndDirFmt\n+ - ArtificialGroupingFormat\n - ProteinMultipleProfileHmmDirectoryFmt\n- - QualityFilterStatsFmt\n- - MixedCaseAlignedDNAFASTAFormat\n- - NCBITaxonomyDirFmt\n- - Kraken2ReportDirectoryFormat\n- - BAMDirFmt\n- - BLAST6Format\n- - ProteinsDirectoryFormat\n- - NewickFormat\n- - SingleLanePerSampleSingleEndFastqDirFmt\n- - DataLoafPackageDirFmt\n- - RNAFASTAFormat\n- - ProcrustesStatisticsFmt\n+ - SampleEstimatorDirFmt\n+ - SingleEndFastqManifestPhred33\n+ - Kraken2OutputDirectoryFormat\n+ - EggnogProteinSequencesDirFmt\n+ - MixedCaseAlignedRNAFASTAFormat\n+ - DNAFASTAFormat\n+ - EMPSingleEndCasavaDirFmt\n+ - OrdinationFormat\n - DNASingleProfileHmmDirectoryFmt\n - SingleLanePerSamplePairedEndFastqDirFmt\n+ - PairedDNASequencesDirectoryFormat\n+ - ImmutableMetadataFormat\n+ - AlphaDiversityFormat\n+ - SingleEndFastqManifestPhred64\n+ - AlignedProteinFASTAFormat\n+ - GenesDirectoryFormat\n+ - DADA2BaseTransitionStatsFormat\n - TaxonomicClassiferTemporaryPickleDirFmt\n- - MAGtoContigsFormat\n- - ArtificialGroupingFormat\n- - MultiBAMDirFmt\n+ - SILVATaxonomyFormat\n+ - EMPPairedEndCasavaDirFmt\n+ - DNAMultipleProfileHmmDirectoryFmt\n+ - BLASTDBDirFmtV5\n+ - PlacementsFormat\n+ - MultiFASTADirectoryFormat\n+ - CasavaOneEightLanelessPerSampleDirFmt\n+ - PairedRNASequencesDirectoryFormat\n+ - BooleanSeriesFormat\n+ - SRAMetadataFormat\n+ - PairedEndFastqManifestPhred33\n+ - RNASingleProfileHmmDirectoryFmt\n+ - DifferentialFormat\n+ - GenomeSequencesDirectoryFormat\n+ - ProcrustesStatisticsFmt\n+ - MultiMAGSequencesDirFmt\n+ - AlignedDNAFASTAFormat\n+ - PairedEndFastqManifestPhred64\n+ - DADA2StatsFormat\n+ - MultiplexedPairedEndBarcodeInSequenceDirFmt\n+ - TableJSONLFileFormat\n+ - MixedCaseDNAFASTAFormat\n+ - PredictionsFormat\n+ - Kraken2ReportDirectoryFormat\n+ - SeppReferenceDirFmt\n+ - PairedEndFastqManifestPhred33V2\n+ - LociDirectoryFormat\n+ - Bowtie2IndexDirFmt\n+ - UchimeStatsFmt\n+ - MultiBowtie2IndexDirFmt\n+ - ErrorCorrectionDetailsFmt\n+ - NCBITaxonomyDirFmt\n+ - QualityFilterStatsFmt\n+ - Kraken2DBDirectoryFormat\n+ - DataLoafPackageDirFmt\n+ - SingleLanePerSampleSingleEndFastqDirFmt\n+ - PairedEndFastqManifestPhred64V2\n - FirstDifferencesFormat\n - KaijuDBDirectoryFormat\n- - DecontamScoreFormat\n- - LociDirectoryFormat\n- - DNAMultipleProfileHmmDirectoryFmt\n- - TableJSONLFileFormat\n- - AlignedRNAFASTAFormat\n- - SingleEndFastqManifestPhred33\n- - BLASTDBDirFmtV5\n- - MAGSequencesDirFmt\n- - MixedCaseRNAFASTAFormat\n- - GenomeSequencesDirectoryFormat\n- - SingleEndFastqManifestPhred33V2\n- - SampleEstimatorDirFmt\n- - RNASingleProfileHmmDirectoryFmt\n- - ProteinFASTAFormat\n- - ErrorCorrectionDetailsFmt\n- - EMPSingleEndCasavaDirFmt\n- - MultiplexedFastaQualDirFmt\n- - SingleEndFastqManifestPhred64\n- - EggnogRefDirFmt\n- - SILVATaxidMapFormat\n- - MultiplexedPairedEndBarcodeInSequenceDirFmt\n- - RNAMultipleProfileHmmDirectoryFmt\n </help>\n <citations>\n <citation type="doi">10.1038/s41587-019-0209-9</citation>\n' |