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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef |
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added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r 54c96a529c59 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon May 18 13:33:59 2015 -0400 |
| b |
| @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="rnastar" version="2.4.0d"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz</action> + <action type="shell_command">make</action> + <action type="make_directory">$INSTALL_DIR</action> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="move_file"> + <source>STAR</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable> + </action> + </actions> + </install> + <readme> +Installs the STAR binary for rnastar - see https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz +was https://code.google.com/p/rna-star/ + </readme> + </package> +</tool_dependency> + |