| Next changeset 1:6757330f89cd (2015-02-03) |
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Commit message:
Imported from capsule None |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 54e961ee33d4 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jan 27 09:02:04 2015 -0500 |
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| @@ -0,0 +1,32 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="vienna_rna" version="1.8.5"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + </action> + <action type="shell_command">./configure --prefix $INSTALL_DIR</action> + <action type="change_directory">Perl</action> + <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action> + <action type="change_directory">..</action> + <action type="make_install" /> + <action type="set_environment"> + <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> + <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable> + <environment_variable action="set_to" name="ROOT_VIENNA_RNA_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme> + </package> +</tool_dependency> |