| Previous changeset 4:8d5e4622dc60 (2015-03-19) Next changeset 6:664fbd8919f3 (2015-03-19) |
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Commit message:
Uploaded |
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modified:
ngsplot_galaxytoolshed_v1.0/ngsplot_main/ngsplot.xml |
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removed:
ngsplot_galaxytoolshed_v1.0/ngsplot-2.47.1.tar.gz ngsplot_galaxytoolshed_v1.0/tool_dependencies.xml |
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| diff -r 8d5e4622dc60 -r 5621523bbe56 ngsplot_galaxytoolshed_v1.0/ngsplot-2.47.1.tar.gz |
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| Binary file ngsplot_galaxytoolshed_v1.0/ngsplot-2.47.1.tar.gz has changed |
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| diff -r 8d5e4622dc60 -r 5621523bbe56 ngsplot_galaxytoolshed_v1.0/ngsplot_main/ngsplot.xml --- a/ngsplot_galaxytoolshed_v1.0/ngsplot_main/ngsplot.xml Thu Mar 19 13:51:36 2015 -0400 +++ b/ngsplot_galaxytoolshed_v1.0/ngsplot_main/ngsplot.xml Thu Mar 19 16:51:28 2015 -0400 |
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| @@ -1,9 +1,5 @@ <tool id="ngs.plot" name="ngs.plot"> -<requirements> - <requirement type="package" version="2.47.1">ngsplot</requirement> -</requirements> - <command interpreter="perl"> #if $numsamples.numsamples2 == "1": runNGSplot.pl |
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| diff -r 8d5e4622dc60 -r 5621523bbe56 ngsplot_galaxytoolshed_v1.0/tool_dependencies.xml --- a/ngsplot_galaxytoolshed_v1.0/tool_dependencies.xml Thu Mar 19 13:51:36 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,23 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="ngsplot" version="2.47.1"> - <install version="1.0"> - <actions> - <action type="shell_command">tar -xzvf ngsplot-2.47.1.tar.gz</action> - <action type="move_directory_files"> - <source_directory>ngsplot</source_directory> - <destination_directory>$INSTALL_DIR/</destination_directory> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ngsplot/bin</environment_variable> - </action> - <action type="set_environment"> - <environment_variable name="NGSPLOT" action="prepend_to">$INSTALL_DIR/ngsplot</environment_variable> - </action> - </actions> - </install> - <readme> - This installation of ngsplot assumes that R v3.0+ has already been installed on your system, including R packages doMC and caTools, as well as bioconductor packages BSgenome, Rsamtools, and ShortRead. For more information on how to install these additional R packages, see https://code.google.com/p/ngsplot/. - </readme> - </package> -</tool_dependency> |