| Previous changeset 3:5c289bf13a08 (2013-09-05) Next changeset 5:2152cd50e4e4 (2013-09-05) |
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readme.rst |
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| diff -r 5c289bf13a08 -r 563743fcaae1 readme.rst --- a/readme.rst Thu Sep 05 03:59:23 2013 -0400 +++ b/readme.rst Thu Sep 05 04:07:37 2013 -0400 |
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| @@ -11,7 +11,7 @@ - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. -- **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI (ftp) at the following address. +- **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the `NCBI ftp site`_ ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/ - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system @@ -33,3 +33,5 @@ This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/. + +.. _`NCBI ftp site`://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/ |