| Previous changeset 10:c9e6e2e7697c (2016-08-16) Next changeset 12:05d48b118f81 (2016-08-16) |
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Commit message:
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modified:
filter_fasta.py |
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| diff -r c9e6e2e7697c -r 573c36ff075f filter_fasta.py --- a/filter_fasta.py Tue Aug 16 20:36:24 2016 -0400 +++ b/filter_fasta.py Tue Aug 16 20:40:19 2016 -0400 |
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| @@ -84,10 +84,8 @@ x.write(i+'\n'+seq[cnt]+'\n') cnt+=1 x.close() -#fasta = sys.argv[1] # fasta file to filter -#data = sys.argv[2] # scaffold report #2 -- filename -fasta = r"C:\Users\Owner\Desktop\APOSTL\SAINT_preprocessing\SwissProt_HUMAN_2014_08.fasta" -data = r"C:\Users\Owner\Desktop\APOSTL\Scaffold\scaffold_EGFR.txt" +fasta = sys.argv[1] # fasta file to filter +data = sys.argv[2] # scaffold report #2 -- filename FilterFastaSeq(fasta,getAccessions(data)) os.rename("output.txt", "output1.txt") \ No newline at end of file |