| Previous changeset 3:4258854759ba (2016-03-01) Next changeset 5:b3c7199d8786 (2018-09-07) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 89e3a62dd6cbc8bcec84d08c1710bfb4e7f5938f |
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modified:
alignment.xml clustering.xml vsearch_macros.xml |
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| diff -r 4258854759ba -r 576963db5f1b alignment.xml --- a/alignment.xml Tue Mar 01 07:07:03 2016 -0500 +++ b/alignment.xml Fri Jan 20 03:39:22 2017 -0500 |
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| @@ -32,6 +32,7 @@ </inputs> <outputs> <data name="outfile" format="fasta" label="${tool.name} on ${on_string}" /> + <expand macro="userfields_output" /> </outputs> <tests> <test> |
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| diff -r 4258854759ba -r 576963db5f1b clustering.xml --- a/clustering.xml Tue Mar 01 07:07:03 2016 -0500 +++ b/clustering.xml Fri Jan 20 03:39:22 2017 -0500 |
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| @@ -70,7 +70,7 @@ <param name="infile" type="data" format="fasta" label="Select your input FASTA file" help="" /> <conditional name="clustering_mode"> <param name="clustering_mode_select" type="select" label="Choose sorting method to use before clustering" help=""> - <option value="cluster_fast" default="True">Cluster sequences after sorting by length (--cluster-fast)</option> + <option value="cluster_fast" selected="True">Cluster sequences after sorting by length (--cluster-fast)</option> <option value="cluster_smallmem">Cluster already sorted sequences (--cluster-smallmem)</option> </param> <when value="cluster_fast"> |
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| diff -r 4258854759ba -r 576963db5f1b vsearch_macros.xml --- a/vsearch_macros.xml Tue Mar 01 07:07:03 2016 -0500 +++ b/vsearch_macros.xml Fri Jan 20 03:39:22 2017 -0500 |
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| @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.9.7">vsearch</requirement> + <requirement type="package" version="@VERSION@">vsearch</requirement> </requirements> </xml> <token name="@VERSION@">1.9.7</token> @@ -159,19 +159,18 @@ </xml> <xml name="general_output"> - <param name="outputs" type="select" multiple="True" label="Select output files" help=""> + <param name="outputs" type="select" multiple="True" optional="false" label="Select output files" help=""> <option value="--alnout">Human-readable alignment output</option> <option value="--blast6out" selected="True">Blast-like tab-separated output</option> <option value="--fastapairs">Write query/target pairs of sequences</option> <yield/> - <validator type="no_options" message="Please select at least one output." /> </param> </xml> <token name="@EXTERNAL_DOCUMENTATION@"> <![CDATA[ -For details about this tool, please refer to the `github account <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/raw/master/doc/vsearch_manual.pdf>`_. +For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch_manual.pdf>`_. ]]> </token> |