| Previous changeset 3:a8a4f94aa321 (2018-03-26) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfallelicprimitives commit 36e9065027cc7bf721e9d203208477ee88906c57" |
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modified:
macros.xml vcfallelicprimitives.xml |
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| diff -r a8a4f94aa321 -r 57a16b310fe8 macros.xml --- a/macros.xml Mon Mar 26 12:19:14 2018 -0400 +++ b/macros.xml Thu Jan 23 08:02:42 2020 -0500 |
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| @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.0_rc1">vcflib</requirement> + <requirement type="package" version="1.0.0_rc3">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,10 +10,10 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> - <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> - <xml name="citations"> - <citations> - <citation type="bibtex"> + <token name="@WRAPPER_VERSION@">1.0.0_rc3</token> + <xml name="citations"> + <citations> + <citation type="bibtex"> @misc{Garrison2015, author = {Garrison, Erik}, year = {2015}, @@ -22,8 +22,8 @@ journal = {GitHub repository}, url = {https://github.com/ekg/vcflib}, } - </citation> - </citations> - </xml> + </citation> + </citations> + </xml> <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token> </macros> |
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| diff -r a8a4f94aa321 -r 57a16b310fe8 vcfallelicprimitives.xml --- a/vcfallelicprimitives.xml Mon Mar 26 12:19:14 2018 -0400 +++ b/vcfallelicprimitives.xml Thu Jan 23 08:02:42 2020 -0500 |
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| @@ -7,12 +7,12 @@ <expand macro="requirements"></expand> <expand macro="stdio" /> <command> - cat "${input}" | vcfallelicprimitives + cat '${input}' | vcfallelicprimitives ${m_option} - -t "${t_option}" + -t '${t_option}' -L "${max_length}" $keep_info - $keep_geno > "${out_file1}" + $keep_geno > '${out_file1}' </command> <inputs> <param format="vcf" name="input" type="data" label="Select VCF dataset"/> |