| Previous changeset 4:9129584416e2 (2017-05-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_rmdup commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6 |
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modified:
macros.xml |
| b |
| diff -r 9129584416e2 -r 586f9e1cdb2b macros.xml --- a/macros.xml Tue May 09 11:18:58 2017 -0400 +++ b/macros.xml Mon Jul 29 08:45:55 2019 -0400 |
| b |
| @@ -6,6 +6,21 @@ </requirements> </xml> <token name="@TOOL_VERSION@">1.3.1</token> + <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token> + <xml name="filter_options"> + <option value="1">Read is paired</option> + <option value="2">Read is mapped in a proper pair</option> + <option value="4">The read is unmapped</option> + <option value="8">The mate is unmapped</option> + <option value="16">Read strand</option> + <option value="32">Mate strand</option> + <option value="48">Read is the first in a pair</option> + <option value="64">Read is the second in a pair</option> + <option value="256">The alignment or this read is not primary</option> + <option value="512">The read fails platform/vendor quality checks</option> + <option value="768">The read is a PCR or optical duplicate</option> + <option value="1024">Supplementary alignment</option> + </xml> <xml name="citations"> <citations> <citation type="bibtex"> |