| Previous changeset 5:af454e5a9ef5 (2016-08-06) Next changeset 7:e01b49c112b0 (2016-08-06) |
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Commit message:
Uploaded |
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modified:
filter_fasta.py |
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| diff -r af454e5a9ef5 -r 5990c4dbfbaa filter_fasta.py --- a/filter_fasta.py Sat Aug 06 17:00:41 2016 -0400 +++ b/filter_fasta.py Sat Aug 06 17:04:57 2016 -0400 |
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| @@ -22,7 +22,6 @@ line = line.strip() temp = line.split('\t') output.append(temp) - print temp return output def getAccessions(infile): # get list of protein accessions from your data data = readtab(infile) @@ -80,10 +79,9 @@ if merged!="": seq.append(merged) cnt=0 - with open("output.fasta","wt") as x: + with open("output.fasta","w") as x: for i in header: x.write(i+'\n'+seq[cnt]+'\n') - print i+'\n'+seq[cnt]+'\n' cnt+=1 fasta = sys.argv[1] # fasta file to filter data = sys.argv[2] # scaffold report #2 -- filename |