| Previous changeset 13:9dbfc4fcef0a (2014-05-26) Next changeset 15:5972e67030fd (2014-05-27) |
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Commit message:
re-export LD_LIBRARY_PATH so that the required libraries can also be found at runtime |
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modified:
tool_dependencies.xml |
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| diff -r 9dbfc4fcef0a -r 59b33d253163 tool_dependencies.xml --- a/tool_dependencies.xml Mon May 26 05:26:11 2014 -0400 +++ b/tool_dependencies.xml Mon May 26 09:28:34 2014 -0400 |
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| @@ -59,6 +59,7 @@ <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable> <!-- empty PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path --> <environment_variable action="set_to" name="PYTHONPATH" /> <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> @@ -68,9 +69,11 @@ </install> <readme> - Python 3.4.1. Configured with the default settings, using --prefix=$INSTALL_DIR. + Python 3.4.1 - Python as of version 3.3 includes a built-in virtual environment manager. To create a python 3 virtual env, include the following actions in your tool_dependencies.xml: + This build of python is configured with --enable-loadable-sqlite-extensions and a --prefix, any other settings are default. This build does not include modules for lzma, Tkinter and dbm, but does include ssl, gdbm and sqlite. Adding the missing modules should not be very difficult but requires wrapping the external sources that these modules require inside galaxy. + + Python as of version 3.3 includes a built-in virtual environment manager. To create a python 3 virtual env, include the following actions in your tool_dependencies.xml: <action type="set_environment_for_install"> <repository name="python3" owner="jankanis"> |