| Previous changeset 3:a1c846233094 (2014-07-09) Next changeset 5:47a0bcb1188d (2014-09-23) |
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Commit message:
Uploaded |
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modified:
blockclust_workflow_clustering.ga blockclust_workflow_complete.ga repository_dependencies.xml |
| b |
| diff -r a1c846233094 -r 59e321cafca7 blockclust_workflow_clustering.ga --- a/blockclust_workflow_clustering.ga Wed Jul 09 07:49:36 2014 -0400 +++ b/blockclust_workflow_clustering.ga Tue Sep 23 08:33:55 2014 -0400 |
| [ |
| @@ -18,7 +18,7 @@ "outputs": [], "position": { "left": 217, - "top": 282.5 + "top": 289.5 }, "tool_errors": null, "tool_id": null, @@ -74,7 +74,7 @@ ], "position": { "left": 446.5, - "top": 239.5 + "top": 246.5 }, "post_job_actions": { "HideDatasetActioncluster_dist": { @@ -144,7 +144,7 @@ ], "position": { "left": 740, - "top": 271 + "top": 278 }, "post_job_actions": { "HideDatasetActionout_file1": { @@ -179,7 +179,7 @@ ], "position": { "left": 961.5, - "top": 219.5 + "top": 226.5 }, "post_job_actions": { "HideDatasetActionoutput": { @@ -246,8 +246,8 @@ } ], "position": { - "left": 1220.5, - "top": 375.5 + "left": 1268.5, + "top": 260.5 }, "post_job_actions": { "HideDatasetActioncluster_dist": { @@ -273,7 +273,7 @@ }, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", - "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", + "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [] |
| b |
| diff -r a1c846233094 -r 59e321cafca7 blockclust_workflow_complete.ga --- a/blockclust_workflow_complete.ga Wed Jul 09 07:49:36 2014 -0400 +++ b/blockclust_workflow_complete.ga Tue Sep 23 08:33:55 2014 -0400 |
| [ |
| @@ -17,8 +17,8 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 217, - "top": 276.5 + "left": 240, + "top": 315.5 }, "tool_errors": null, "tool_id": null, @@ -73,8 +73,8 @@ } ], "position": { - "left": 446.5, - "top": 233.5 + "left": 469.5, + "top": 272.5 }, "post_job_actions": { "HideDatasetActioncluster_dist": { @@ -143,8 +143,8 @@ } ], "position": { - "left": 740, - "top": 265 + "left": 763, + "top": 304 }, "post_job_actions": { "HideDatasetActionout_file1": { @@ -178,8 +178,8 @@ } ], "position": { - "left": 961.5, - "top": 213.5 + "left": 984.5, + "top": 252.5 }, "post_job_actions": { "HideDatasetActionoutput": { @@ -246,8 +246,8 @@ } ], "position": { - "left": 1220.5, - "top": 369.5 + "left": 1287.5, + "top": 294.5 }, "post_job_actions": { "HideDatasetActioncluster_dist": { @@ -273,7 +273,7 @@ }, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", - "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", + "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [] @@ -296,8 +296,8 @@ } ], "position": { - "left": 1562, - "top": 204 + "left": 1588, + "top": 232 }, "post_job_actions": { "HideDatasetActionout_file1": { @@ -340,8 +340,8 @@ } ], "position": { - "left": 1857, - "top": 256.5 + "left": 1880, + "top": 295.5 }, "post_job_actions": { "HideDatasetActionmultiple_alignment_output": { @@ -368,7 +368,7 @@ "input_connections": { "tool_mode|clusters_bed": { "id": 4, - "output_name": "clusters" + "output_name": "model_based_pred_bed" }, "tool_mode|cmsearch_out": { "id": 6, @@ -416,8 +416,8 @@ } ], "position": { - "left": 2165.5, - "top": 313.5 + "left": 2184.5, + "top": 338.5 }, "post_job_actions": { "HideDatasetActionclusters": { @@ -459,4 +459,4 @@ "user_outputs": [] } } -} +} \ No newline at end of file |
| b |
| diff -r a1c846233094 -r 59e321cafca7 repository_dependencies.xml --- a/repository_dependencies.xml Wed Jul 09 07:49:36 2014 -0400 +++ b/repository_dependencies.xml Tue Sep 23 08:33:55 2014 -0400 |
| b |
| @@ -1,8 +1,8 @@ <?xml version="1.0"?> <repositories description="This workflow requires a number of different repositories."> - <repository changeset_revision="27dde42069e0" name="blockclust" owner="rnateam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="57f66041cc0f" name="blockclust" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" /> <!--<repository name="segemehl" owner="rnateam" />--> - <repository changeset_revision="6ae946589f04" name="blockbuster" owner="rnateam" toolshed="http://toolshed.g2.bx.psu.edu" /> - <repository changeset_revision="55bb96edfc07" name="infernal" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="6ae946589f04" name="blockbuster" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="55bb96edfc07" name="infernal" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu" /> <!--<repository name="graphclust" owner="rnateam" />--> </repositories> |