| Next changeset 1:b654e5485eee (2015-03-28) |
|
Commit message:
Imported from capsule None |
|
added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r 5a621464e533 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Mar 26 14:37:17 2015 -0400 |
| [ |
| @@ -0,0 +1,30 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="rnastructure" version="5.7"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz</action> + <action type="shell_command">make all</action> + <action type="shell_command">export INSTALL_DIR=$INSTALL_DIR ; make install</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/exe</environment_variable> + </action> + </actions> + </install> + <readme> +<![CDATA[ +RNAstructure is a complete package for RNA and DNA secondary structure +prediction and analysis. It includes algorithms for secondary structure +prediction, including facility to predict base pairing probabilities. It +also can be used to predict bimolecular structures and can predict the +equilibrium binding affinity of an oligonucleotide to a structured RNA +target. This is useful for siRNA design. It can also predict secondary +structures common to two, unaligned sequences, which is much more accurate +than single sequence secondary structure prediction. Finally, RNAstructure +can take a number of different types of experiment mapping data to constrain +or restrain structure prediction. These include chemical mapping, enzymatic +mapping, NMR, and SHAPE data. +]]> + </readme> + </package> +</tool_dependency> |