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Changeset 1:5a82eb9e1b89 (2020-01-19)

Previous changeset 0:47936349f3e9 (2017-12-19) Next changeset 2:d1805f9c4c82 (2024-09-27)

Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"

modified:
macros.xml
poretools_hist.xml

removed:
test-data/poretools-events-out1.tabular
test-data/poretools-events-out2.tabular

diff -r 47936349f3e9 -r 5a82eb9e1b89 macros.xml
--- a/macros.xml Tue Dec 19 14:57:21 2017 -0500
+++ b/macros.xml Sun Jan 19 09:06:53 2020 -0500

[

@@ -47,4 +47,6 @@
         <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
         <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
     </xml>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token>
+    <token name="@profile@">18.09</token>
</macros>

diff -r 47936349f3e9 -r 5a82eb9e1b89 poretools_hist.xml
--- a/poretools_hist.xml Tue Dec 19 14:57:21 2017 -0500
+++ b/poretools_hist.xml Sun Jan 19 09:06:53 2020 -0500

[

@@ -1,5 +1,5 @@
<?xml version="1.0"?>
-<tool id="poretools_hist" name="Generate histogram" version="@VERSION@.0">
+<tool id="poretools_hist" name="Generate histogram" version="@VERSION@.1">
     <description>of nanopore read lengths</description>
     <macros>
         <import>macros.xml</import>
@@ -7,8 +7,8 @@
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
-        poretools hist '$input' --saveas histogram.$extension --min-length $min_length
-            --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output'
+@MPLBACKEND@
+poretools hist '$input' --saveas histogram.$extension --min-length $min_length --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output'
     ]]>
     </command>
     <inputs>
@@ -24,17 +24,17 @@
         <test>
             <expand macro="test_input" />
             <param name="extension" value="png" />
-            <output name="output" file="poretools-hist-out1.png" ftype="png" lines_diff="73" />
+            <output name="output" file="poretools-hist-out1.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <expand macro="test_input" />
             <param name="extension" value="pdf" />
-            <output name="output" file="poretools-hist-out1.pdf" ftype="pdf" lines_diff="36" />
+            <output name="output" file="poretools-hist-out1.pdf" ftype="pdf" lines_diff="272" />
         </test>
         <test>
             <expand macro="test_input" />
             <param name="extension" value="svg" />
-            <output name="output" file="poretools-hist-out1.svg" ftype="svg" lines_diff="138" />
+            <output name="output" file="poretools-hist-out1.svg" ftype="svg" lines_diff="140" />
         </test>
     </tests>
     <help>

diff -r 47936349f3e9 -r 5a82eb9e1b89 test-data/poretools-events-out1.tabular
--- a/test-data/poretools-events-out1.tabular Tue Dec 19 14:57:21 2017 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

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diff -r 47936349f3e9 -r 5a82eb9e1b89 test-data/poretools-events-out2.tabular
--- a/test-data/poretools-events-out2.tabular Tue Dec 19 14:57:21 2017 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000