| Previous changeset 0:8129ff2290dd (2015-07-16) Next changeset 2:f29b264120f9 (2015-07-16) |
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Commit message:
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dbAnnot.xml |
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| diff -r 8129ff2290dd -r 5af6f6e0a0da dbAnnot.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dbAnnot.xml Thu Jul 16 09:17:56 2015 -0400 |
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| @@ -0,0 +1,39 @@ +<tool id="dbAnnot" name="dbAnnot" version="1.0"> + <description>Database Annotation (dbAnnot) allows for easy annotations of biological identifiers. </description> + <command interpreter="/usr/bin/php"> + dbAnnotRestClient.php inputValues='$inputValues' annotations='$annotations' taxonId='$taxon' fileType='$filetype' > $result + </command> + <inputs> + <param name="annotations" type="text" size="30" label="Enter annotation ID name(s)" /> + <param name="inputValues" type="text" area="true" size="4x40" label="Paste input ID value(s)" /> <param name="taxon" size="30" type="text" label="Enter a taxon id (optional)" /> + <param name="filetype" type="select" label="fileType options"> + <option value="table">table</option> + <option value="xml">xml</option> + <option value="json">json</option> + </param> + </inputs> + + <outputs> + <data format="html" name="result" label="dbAnnot.results"> + <change_format> + <when input="filetype" value="xml" format="xml" /> + </change_format> + </data> + </outputs> + + + <help> + +.. class:: infomark + +**What it does** + +Add instructions here. + +----- + + +**Usage** +dbAnnot.php inputValues='SP140' annotations='Genes,Pathways' fileType='table' TaxonId='9606' (optional) + </help> +</tool> |