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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 066e075c1599b29e92708194db2b2ccc30b7677c |
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modified:
macros.xml metaviralspades.xml |
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| diff -r 328aa71f0f3c -r 5b26685e5d3b macros.xml --- a/macros.xml Tue Aug 23 08:00:30 2022 +0000 +++ b/macros.xml Mon Feb 12 21:46:08 2024 +0000 |
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| @@ -1,6 +1,6 @@ <macros> - <token name="@TOOL_VERSION@">3.15.4</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@TOOL_VERSION@">3.15.5</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">spades</requirement> @@ -504,10 +504,6 @@ </param> <when value="true"> <expand macro="input_files_paired" format="fastq,fastq.gz,fastqsanger.gz,fasta,fasta.gz" label="FASTA/FASTQ file(s)" help="@HELP@"/> - <param name="library_number" type="select" label="The samples belong to the same library" help="If the reads have been generated from the sample sample, it means that they belong to the same library."> - <option value="true" selected="true">True</option> - <option value="false">False</option> - </param> </when> <when value="false"/> </conditional> |
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| diff -r 328aa71f0f3c -r 5b26685e5d3b metaviralspades.xml --- a/metaviralspades.xml Tue Aug 23 08:00:30 2022 +0000 +++ b/metaviralspades.xml Mon Feb 12 21:46:08 2024 +0000 |
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| @@ -3,6 +3,9 @@ <macros> <import>macros.xml</import> </macros> + <xrefs> + <xref type="bio.tools">metaviralspades</xref> + </xrefs> <expand macro="requirements"/> <expand macro="stdio"/> <expand macro="version_command"/> @@ -22,6 +25,7 @@ @OMP_THREADS@ ## run spades.py --metaviral + $operation_mode -o 'output' @RESOURCES@ @INPUT_READS_MAIN@ @@ -52,6 +56,7 @@ </section> <expand macro="kmer"/> <expand macro="phred"/> + <expand macro="operation_mode"/> <expand macro="pipeline_options"> <option value="--careful">Careful: ties to reduce the number of mismatches and short indels. Only recommended for small genomes (--careful)</option> <option value="--iontorrent">Iontorrent: required when assembling IonTorrent data (--iontorrent)</option> |