| Previous changeset 0:0bbe34198e24 (2019-02-09) Next changeset 2:91e255c78eb5 (2019-12-18) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit b2acc1845a25828181597fe5b6982fe116a7796d |
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modified:
permutate_axis.py permutate_axis.xml |
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| diff -r 0bbe34198e24 -r 5b82f2186244 permutate_axis.py --- a/permutate_axis.py Sat Feb 09 14:42:29 2019 -0500 +++ b/permutate_axis.py Mon Jul 22 05:04:15 2019 -0400 |
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| @@ -9,7 +9,7 @@ images = [] raw_image = skimage.io.imread(input_image_path, plugin='tifffile') for i in permutate: - # TODO generalise + # TODO generalise if axis == 0: a_slice = raw_image[i] elif axis == 1: |
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| diff -r 0bbe34198e24 -r 5b82f2186244 permutate_axis.xml --- a/permutate_axis.xml Sat Feb 09 14:42:29 2019 -0500 +++ b/permutate_axis.xml Mon Jul 22 05:04:15 2019 -0400 |
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| @@ -1,14 +1,15 @@ -<tool id="ip_permutate_axis" name="Permutate image" version="0.1"> +<tool id="ip_permutate_axis" name="Permutate image" version="0.2"> <description>along an axis</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> + <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> - <command> + <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/permutate_axis.py' '$input' '$output' $permutate --axis $axis ]]> - </command> + </command> <inputs> <param name="input" type="data" format="tiff" label="Binary Image File"/> <param name="permutate" type="text" value="0,1,2" label="new channel order"> |