| Previous changeset 1:2f8d3924bb3b (2021-12-03) Next changeset 3:d326b943f5e2 (2021-12-11) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 374a2824a264468316f04281ed211079015503b5" |
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modified:
blast2rma.xml macros.xml |
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| diff -r 2f8d3924bb3b -r 5be253dd3e08 blast2rma.xml --- a/blast2rma.xml Fri Dec 03 23:09:53 2021 +0000 +++ b/blast2rma.xml Tue Dec 07 10:17:22 2021 +0000 |
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| @@ -128,7 +128,7 @@ </param> <section name="advanced_options" title="Advanced options" expanded="false"> <expand macro="long_reads_param"/> - <param argument="--maxMatchesPerRead" type="integer" value="100" label="Maximum matches per read"/> + <expand macro="max_matches_per_read_param"/> <expand macro="classify_param"/> <expand macro="blast_params"/> <expand macro="min_max_params"/> |
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| diff -r 2f8d3924bb3b -r 5be253dd3e08 macros.xml --- a/macros.xml Fri Dec 03 23:09:53 2021 +0000 +++ b/macros.xml Tue Dec 07 10:17:22 2021 +0000 |
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| @@ -38,9 +38,28 @@ </when> </conditional> </macro> + <macro name="input_daa_param"> + <param argument="--in" type="data" format="daa" label="Input DAA file"/> + </macro> <macro name="long_reads_param"> <param argument="--longReads" type="boolean" truevalue="--longReads" falsevalue="" checked="false" label="Parse and analyse input reads as long reads?"/> </macro> + <macro name="max_matches_per_read_param"> + <param argument="--maxMatchesPerRead" type="integer" value="100" label="Maximum matches per read"/> + </macro> + <macro name="only_named_classifications_param"> + <param argument="--only" type="text" value="" label="Names of classifications to use" help="Leave blank to use all classifications"> + <sanitizer> + <valid initial="@VALIDINITIAL@"> + <remove value="'" /> + <add value="|" /> + </valid> + <mapping initial="none"> + <add source="'" target="'"'"'" /> + </mapping> + </sanitizer> + </param> + </macro> <macro name="classification_options"> <option value="EC" selected="true">EC</option> <option value="EGGNOG">EGGNOG</option> @@ -102,7 +121,7 @@ <mapping initial="none"> <add source="'" target="'"'"'" /> </mapping> - </sanitizer> + </sanitizer> </xml> <xml name="citations"> <citations> |