| Previous changeset 11:19e45916daf9 (2021-04-21) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 2866078b3bef6adef82a499d9b38a56da1d372c3 |
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modified:
thermo_converter.xml |
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| diff -r 19e45916daf9 -r 5c04f9decc01 thermo_converter.xml --- a/thermo_converter.xml Wed Apr 21 12:23:27 2021 +0000 +++ b/thermo_converter.xml Mon May 19 06:41:14 2025 +0000 |
| b |
| @@ -1,11 +1,17 @@ -<tool id="thermo_raw_file_converter" name="Thermo" version="@TOOL_VERSION@+galaxy0" profile="20.05"> +<tool id="thermo_raw_file_converter" name="Thermo" version="@TOOL_VERSION@+galaxy1" profile="20.05"> <description>RAW file converter</description> <macros> <token name="@TOOL_VERSION@">1.3.4</token> </macros> + + <xrefs> + <xref type="bio.tools">ThermoRawFileParser</xref> + </xrefs> + <requirements> <requirement type="package" version="@TOOL_VERSION@">thermorawfileparser</requirement> </requirements> + <stdio> <regex match="ERROR" source="both" level="fatal" description="Fatal error"/> </stdio> @@ -64,7 +70,6 @@ <param argument="--noPeakPicking" name="peakpicking_boolean" type="boolean" truevalue="" falsevalue="-p" checked="true" label="Use the peak picking provided by the native thermo library" help=""/> </when> - <when value="3"/> </conditional> <param argument="--metadata" name="output_metadata_selector" type="select" label="Output metadata"> <option value="off" selected="True">No</option> @@ -164,7 +169,7 @@ <param name="output_metadata_selector" value="1"/> <param name="ignore_instrument_errors_boolean" value="true"/> <param name="allDetectors" value="true"/> - <param name="includeExceptionData" value="--includeExceptionData"/> + <param name="includeExceptionData" value="true"/> <param name="msLevel" value="1"/> <output name="output" value="really_small.indexed_mzML" ftype="mzml"/> <output name="output_metadata" ftype="txt"> |