| Previous changeset 13:ea5e944f447d (2024-03-27) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit ab38fa3d5ec06729c1efa86240ec57b8143b21ed |
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modified:
ena_upload.xml samples_macros.xml |
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| diff -r ea5e944f447d -r 5cb6146337d8 ena_upload.xml --- a/ena_upload.xml Wed Mar 27 16:46:55 2024 +0000 +++ b/ena_upload.xml Wed Jun 12 16:01:11 2024 +0000 |
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| @@ -1,7 +1,7 @@ <tool id="ena_upload" name="ENA Upload tool" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT"> <description>Submission of (meta)data to the European Nucleotide Archive (ENA)</description> <macros> - <token name="@TOOL_VERSION@">0.7.1</token> + <token name="@TOOL_VERSION@">0.7.3</token> <token name="@VERSION_SUFFIX@">1</token> <import>samples_macros.xml</import> </macros> @@ -796,7 +796,7 @@ <has_text_matching expression="--data '1.fastqsanger.gz' '2.fastqsanger.gz'"/> <has_text_matching expression="--action 'modify' --center 'Some research center'"/> <has_text_matching expression="--checklist ERC000033"/> - <not_has_text text="add" /> + <not_has_text text="--action 'add'" /> </assert_command> </test> <!--Test 9: isa JSON input of NON-VIRAL samples--> |
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| diff -r ea5e944f447d -r 5cb6146337d8 samples_macros.xml --- a/samples_macros.xml Wed Mar 27 16:46:55 2024 +0000 +++ b/samples_macros.xml Wed Jun 12 16:01:11 2024 +0000 |
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| @@ -126,13 +126,13 @@ <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/> <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/> <param name="tax_id" type="text" label="Enter the taxonomic ID corresponding to the sample species" /> - <param name="collection_date" type="text" label="Collection date" optional="True" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided"> + <param name="collection_date" type="text" label="Collection date" optional="False" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided"> <option value="not collected">not collected</option> <option value="restricted access">restricted access</option> <option value="not provided">not provided</option> <validator type="regex" message="Data format is not valid">(^[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?(/[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?)?$)|(^not collected$)|(^not provided$)|(^restricted access$)</validator> </param> - <param name="geo_location_country" type="select" label="Select the country where the sample was obtained"> + <param name="geo_location_country" type="select" optional="False" label="Select the country where the sample was obtained"> <options from_data_table="geographic_location_1"> <column name="value" index="0"/> </options> @@ -211,13 +211,13 @@ <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/> <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/> <param name="tax_id" type="integer" value="0" label="Enter the taxonomic ID corresponding to the sample species" /> - <param name="collection_date" type="text" label="Collection date" optional="True" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided"> + <param name="collection_date" type="text" label="Collection date" optional="False" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided"> <option value="not collected">not collected</option> <option value="restricted access">restricted access</option> <option value="not provided">not provided</option> <validator type="regex" message="Data format is not valid">(^[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?(/[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?)?$)|(^not collected$)|(^not provided$)|(^restricted access$)</validator> </param> - <param name="geo_location_country" type="select" label="Select the country where the sample was obtained"> + <param name="geo_location_country" type="select" optional="False" label="Select the country where the sample was obtained"> <options from_data_table="geographic_location_1"> <column name="value" index="0"/> </options> |