| Previous changeset 9:e1f5bdd8279c (2019-10-17) Next changeset 11:80414c33a59a (2024-11-21) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit a656cf7893ea9ce63d0e470c027fc185b5b6d82d" |
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modified:
extract_genomic_dna.xml tool_data_table_conf.xml.sample |
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| diff -r e1f5bdd8279c -r 5cc8e93ee98f extract_genomic_dna.xml --- a/extract_genomic_dna.xml Thu Oct 17 03:00:47 2019 -0400 +++ b/extract_genomic_dna.xml Fri Dec 06 15:24:00 2019 -0500 |
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| @@ -1,9 +1,9 @@ -<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3"> +<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy2"> <description>using coordinates from assembled/unassembled genomes</description> <requirements> <requirement type="package" version="0.7.1">bx-python</requirement> - <requirement type="package" version="1.10.0">six</requirement> - <requirement type="package" version="324">ucsc-fatotwobit</requirement> + <requirement type="package" version="1.13.0">six</requirement> + <requirement type="package" version="377">ucsc-fatotwobit</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #set genome = $input.metadata.dbkey @@ -52,7 +52,7 @@ <when value="cached"> <param name="reference_genome" type="select" label="Using reference genome"> <options from_data_table="twobit"> - <filter type="data_meta" key="dbkey" ref="input" column="dbkey"/> + <filter type="data_meta" key="dbkey" ref="input" column="value"/> </options> <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> </param> |
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| diff -r e1f5bdd8279c -r 5cc8e93ee98f tool_data_table_conf.xml.sample --- a/tool_data_table_conf.xml.sample Thu Oct 17 03:00:47 2019 -0400 +++ b/tool_data_table_conf.xml.sample Fri Dec 06 15:24:00 2019 -0500 |
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| @@ -1,6 +1,6 @@ <tables> <table name="twobit" comment_char="#" allow_duplicate_entries="False"> - <columns>dbkey, value</columns> + <columns>value, path</columns> <file path="tool-data/twobit.loc" /> </table> </tables> |