| Previous changeset 0:a4e086689fae (2015-06-18) Next changeset 2:d71e007323d4 (2015-08-04) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit c4313fc798bb8d55e27da78a3fa5d9774b95aaf7-dirty |
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modified:
mafft.xml |
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| diff -r a4e086689fae -r 5e48c4621f9f mafft.xml --- a/mafft.xml Thu Jun 18 08:59:56 2015 -0400 +++ b/mafft.xml Fri Jul 31 19:02:11 2015 -0400 |
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| @@ -42,6 +42,7 @@ <conditional name="cond_flavour"> <param name="flavourType" type="select" label="MAFFT flavour" help="Run mafft with pre-defined input parameters. Specification of these parameters can be found in the help section."> <option value="mafft-fftns" selected="true">fftns</option> + <option value="mafft --auto">auto</option> <option value="mafft-fftnsi">fftnsi</option> <option value="mafft-nwns">nwns</option> <option value="mafft-nwnsi">nwnsi</option> @@ -53,6 +54,7 @@ <!-- <option value="custom">Custom Parameters</option> this should trigger tweaking of all parameters --> </param> <when value="mafft-fftns"/> + <when value="mafft --auto"/> <when value="mafft-fftnsi"/> <when value="mafft-nwns"/> <when value="mafft-nwnsi"/> @@ -143,7 +145,11 @@ - NW-NS-PartTree-1 (recommended for ~10,000 to ~50,000 sequences; progressive method with the PartTree algorithm): - mafft --retree 1 --maxiterate 0 --nofft --parttree input [> output] - + +**Options:** + +--auto + Automatically selects an appropriate strategy from L-INS-i, FFT-NS-i and FFT-NS-2, according to data size. Default: off (always FFT-NS-2) ]]> </help> <citations> |