| Previous changeset 66:378b47ef4a14 (2017-05-11) Next changeset 68:fc93085430a8 (2017-05-11) |
|
Commit message:
Uploaded |
|
modified:
getGEO/tool_dependencies.xml |
|
removed:
tool_dependencies.xml |
| b |
| diff -r 378b47ef4a14 -r 5e67fa9f807b getGEO/tool_dependencies.xml --- a/getGEO/tool_dependencies.xml Thu May 11 07:14:30 2017 -0400 +++ b/getGEO/tool_dependencies.xml Thu May 11 10:03:02 2017 -0400 |
| b |
| @@ -2,7 +2,7 @@ <tool_dependency> <package name="450kdependency" version="0.0.1"> # TODO: - <repository changeset_revision="602b443fa68d" name="450kdependency" owner="testtool" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="6ab5f9bf0d30" name="450kdependency" owner="testtool" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="R" version="3.2.1"> <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| b |
| diff -r 378b47ef4a14 -r 5e67fa9f807b tool_dependencies.xml --- a/tool_dependencies.xml Thu May 11 07:14:30 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,141 +0,0 @@\n-<?xml version="1.0"?>\n-<tool_dependency>\n- <package name="libcurl" version="7.35">\n- <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n- </package>\n- <package name="R" version="3.2.1">\n- <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n- </package>\n-<package name="450kdependency" version="0.0.1">\n- <install version="1.0">\n- <actions>\n- <action type="setup_r_environment">\n- <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n- <package name="libcurl" version="7.35" />\n- </repository>\n- <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">\n- <package name="R" version="3.2.1" />\n- </repository>\n- <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package>\n- <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.36.1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/matrixStats_0.52.2.tar.gz</package>\n- <package>http://bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.2.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/digest_0.6.12.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/stringi_1.1.5.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/stringr_1.2.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/doRNG_1.6.6.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/DBI_0.6-1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.10.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/BH_1.62.0-1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/plogr_0.1-1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/RSQLite_1.1-2.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/RCurl/RCurl_1.95-4.5.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/XML/XML_3.98-1.2.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/lambda.r_1.1.9.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package>\n- '..b'trib/Archive/markdown/markdown_0.6.5.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/knitr/knitr_1.8.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/httpuv/httpuv_1.2.2.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/shiny/shiny_0.10.2.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/ellipse_0.3-8.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/corpcor_1.6.9.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/assertthat_0.2.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/lazyeval_0.2.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/tibble_1.3.0.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/dplyr_0.5.0.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/tidyr_0.6.2.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/reshape2_1.4.2.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/gtable_0.2.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/doParallel/doParallel_1.0.8.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/colorspace/colorspace_1.2-4.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/munsell/munsell_0.4.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/scales/scales_0.3.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_2.0.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/RGraphics/RGraphics_2.0-13.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/NMF/NMF_0.20.5.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/png_0.1-7.tar.gz</package>\n- <package>https://cran.rstudio.com/src/contrib/igraph_1.0.1.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/whisker_0.3-2.tar.gz</package>\n- <package>https://www.bioconductor.org/packages/release/data/annotation/src/contrib/org.Hs.eg.db_3.4.1.tar.gz</package>\n- <package>https://bioconductor.org/packages/3.1/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.1.2.tar.gz</package>\n- <package>http://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz</package>\n- <package>https://cran.r-project.org/src/contrib/Archive/rstudioapi/rstudioapi_0.2.tar.gz</package>\n- <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package>\n- <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package>\n- </action>\n- </actions>\n- </install>\n- <readme>\n- </readme>\n- </package>\n- </tool_dependency>\n' |