| Previous changeset 13:e215f71d7983 (2020-12-23) Next changeset 15:a8ecb52264c4 (2021-05-07) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7-dirty" |
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modified:
combine.xml |
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| diff -r e215f71d7983 -r 5f066029763e combine.xml --- a/combine.xml Wed Dec 23 22:15:48 2020 +0000 +++ b/combine.xml Fri Feb 19 18:54:56 2021 +0000 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.0"> +<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.1"> <description> combine several mass spectrometry imaging datasets into one </description> @@ -120,6 +120,11 @@ ## same name for MSI data files necessary to combine data into one single coordinate system run(msidata_$i) = "msidata" + ## remove z dimension and 3D information in pixelData to allow combining datasets with and without z dimension + coord(msidata_${i})\$z <- NULL + pData(msidata_${i})\$'3DPositionX' <- NULL + pData(msidata_${i})\$'3DPositionY' <- NULL + ############ 3) Read and process annotation tabular files ###################### #if str($annotation_cond.annotation_tabular) == 'annotation' |