| Previous changeset 2:353b9d58d360 (2023-05-24) Next changeset 4:bd1956f4c2aa (2023-05-25) |
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Commit message:
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 505c3374a3e1e9aa450fcb752f2b8f87558fedbb |
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modified:
recetox_aplcms_correct_time.xml utils.R |
| b |
| diff -r 353b9d58d360 -r 5f667da3804a recetox_aplcms_correct_time.xml --- a/recetox_aplcms_correct_time.xml Wed May 24 14:49:35 2023 +0000 +++ b/recetox_aplcms_correct_time.xml Thu May 25 09:15:23 2023 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy0"> +<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy1"> <description>correct retention time across samples for peak alignment</description> <macros> <import>macros.xml</import> @@ -42,7 +42,7 @@ </inputs> <outputs> - <data label="${tool.name} on ${on_string}" name="output_file" format="parquet" /> + <data label="${($features_table.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" /> </outputs> <tests> |
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| diff -r 353b9d58d360 -r 5f667da3804a utils.R --- a/utils.R Wed May 24 14:49:35 2023 +0000 +++ b/utils.R Thu May 25 09:15:23 2023 +0000 |
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| @@ -41,9 +41,9 @@ save_parquet_collection <- function(feature_tables, sample_names, subdir) { dir.create(subdir) - for (i in seq_len(length(feature_tables))) { - filename <- file.path(subdir, paste0(subdir, "_", sample_names[i], ".parquet")) - feature_table <- as.data.frame(feature_tables[[i]]) + for (i in seq_len(length(table$feature_tables))) { + filename <- file.path(subdir, paste0(sample_names[i], ".parquet")) + feature_table <- as.data.frame(table$feature_tables[[i]]) feature_table <- save_sample_name(feature_table, sample_names[i]) arrow::write_parquet(feature_table, filename) } |