Repository 'deeptools_bam_compare'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare

Changeset 24:5f6d123679f4 (2019-04-02)
Previous changeset 23:c09c23eaf116 (2019-02-20) Next changeset 25:268e91e540ee (2019-05-29)
Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
modified:
bamCompare.xml
deepTools_macros.xml
b
diff -r c09c23eaf116 -r 5f6d123679f4 bamCompare.xml
--- a/bamCompare.xml Wed Feb 20 08:00:54 2019 -0500
+++ b/bamCompare.xml Tue Apr 02 08:16:32 2019 -0400
b
@@ -164,11 +164,7 @@
                 <expand macro="read_processing_options" />
 
                 <expand macro="skipNAs" />
-                <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
-                    help="Skip bins where BOTH files lack coverage.">
-                    <option value="" selected="true">No</option>
-                    <option value="--skipZeroOverZero">Yes, skip them.</option>
-                </param>
+                <expand macro="skipZeroOverZero" />
 
                 <param argument="--ignoreForNormalization" type="text" value="" size="50"
                     label="regions that should be excluded for calculating the scaling factor"
b
diff -r c09c23eaf116 -r 5f6d123679f4 deepTools_macros.xml
--- a/deepTools_macros.xml Wed Feb 20 08:00:54 2019 -0500
+++ b/deepTools_macros.xml Tue Apr 02 08:16:32 2019 -0400
b
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.2.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.2.1.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.2.0">deeptools</requirement>
+            <requirement type="package" version="3.2.1">deeptools</requirement>
             <requirement type="package" version="1.9">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -650,6 +650,14 @@
                  (default: False)" />
     </xml>
 
+    <xml name="skipZeroOverZero">
+        <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
+            help="Skip bins where BOTH files lack coverage.">
+            <option value="" selected="true">No</option>
+            <option value="--skipZeroOverZero">Yes, skip them.</option>
+        </param>
+    </xml>
+
     <xml name="exactScaling">
         <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False"
             label="Compute an exact scaling factor"