| Previous changeset 1:93d623d9979c (2018-09-19) Next changeset 3:543cbeef3949 (2022-02-24) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/porechop commit e68e5869f08e66fbe2787f23b58c1d66e61d9df2" |
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modified:
porechop.xml |
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added:
test-data/test_format.fastq.gz |
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| diff -r 93d623d9979c -r 5f76b20953e5 porechop.xml --- a/porechop.xml Wed Sep 19 08:35:02 2018 -0400 +++ b/porechop.xml Fri Apr 02 19:38:37 2021 +0000 |
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| @@ -1,7 +1,10 @@ -<tool id="porechop" name="Porechop" version="0.2.3"> +<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@" profile="20.01"> <description>adapter trimmer for Oxford Nanopore reads</description> + <macros> + <token name="@WRAPPER_VERSION@">0.2.4</token> + </macros> <requirements> - <requirement type="package" version="0.2.3_seqan2.1.1">porechop</requirement> + <requirement type="package" version="@WRAPPER_VERSION@">porechop</requirement> </requirements> <version_command>porechop --version</version_command> <command detect_errors="exit_code"><![CDATA[ @@ -29,7 +32,7 @@ ]]></command> <inputs> - <param name="input_file" type="data" format="fasta,fastqsanger" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" /> + <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" /> <param name="format" type="select" label="Output format for the reads" help="Output format for the reads"> <option selected="True" value="fasta">fasta</option> <option value="fastq">fastq</option> @@ -97,7 +100,7 @@ <output name="outfile" ftype="fasta" file="out.fasta"/> </test> <test> - <param name="input_file" ftype="fasta" value="test_format.fasta"/> + <param name="input_file" ftype="fastqsanger.gz" value="test_format.fastq.gz"/> <param name="format" value="fastq"/> <output name="outfile" ftype="fastqsanger" file="out.fastq"/> </test> |
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| diff -r 93d623d9979c -r 5f76b20953e5 test-data/test_format.fastq.gz |
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| Binary file test-data/test_format.fastq.gz has changed |