| Previous changeset 11:d92e6f12b790 (2020-06-05) Next changeset 13:8efba12e8f58 (2020-09-10) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty" |
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modified:
scanpy-read-10x.xml scanpy_macros2.xml |
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| diff -r d92e6f12b790 -r 5ff50f4a26cd scanpy-read-10x.xml --- a/scanpy-read-10x.xml Fri Jun 05 09:13:51 2020 -0400 +++ b/scanpy-read-10x.xml Mon Sep 07 14:02:50 2020 +0000 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> +<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>into hdf5 object handled by scanpy</description> <macros> <import>scanpy_macros2.xml</import> @@ -47,7 +47,7 @@ <param name="barcodes" value="barcodes.tsv"/> <!-- <param name="cell_meta" value=""/> --> <param name="output_format" value="anndata"/> - <output name="output_h5" file="output.h5" ftype="h5" compare="sim_size"/> + <output name="output_h5ad" file="read_10x.h5" ftype="h5" compare="sim_size"/> </test> </tests> |
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| diff -r d92e6f12b790 -r 5ff50f4a26cd scanpy_macros2.xml --- a/scanpy_macros2.xml Fri Jun 05 09:13:51 2020 -0400 +++ b/scanpy_macros2.xml Mon Sep 07 14:02:50 2020 +0000 |
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| @@ -1,10 +1,13 @@ <macros> - <token name="@TOOL_VERSION@">1.4.3</token> + <token name="@TOOL_VERSION@">1.6.0</token> <token name="@HELP@">More information can be found at https://scanpy.readthedocs.io</token> <token name="@PROFILE@">18.01</token> <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +1.6.0+galaxy0: Update to scanpy-scripts 0.2.13 (running scanpy ==1.6.0) to incorporate new options, code simplifications, and batch integration methods. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at +EMBL-EBI https://www.ebi.ac.uk/ + 1.4.3+galaxy10: Update to scanpy-scripts 0.2.10 (running scanpy ==1.4.3) to address bugfixes in run-pca. 1.4.3+galaxy10: Update to scanpy-scripts 0.2.9 (running scanpy ==1.4.3) to address bugfixes in find-variable-genes. @@ -46,7 +49,7 @@ <xml name="requirements"> <requirements> - <requirement type="package" version="0.2.10">scanpy-scripts</requirement> + <requirement type="package" version="0.3.0">scanpy-scripts</requirement> <yield/> </requirements> </xml> |