Previous changeset 7:2f63b1cd9122 (2020-11-27) Next changeset 9:45cd8de0d44d (2024-07-08) |
Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 8350493268ce3ced12b1133b9b0f734a288deb75 |
modified:
scmap_get_std_output.xml scmap_macros.xml |
added:
test-data/closest_cells.csv test-data/closest_cells_clusters.rds test-data/closest_cells_clusters.tsv test-data/closest_cells_similarities.csv test-data/index_cell.rds test-data/index_cluster.png test-data/index_cluster.rds test-data/project_cluster.csv test-data/project_cluster.tsv test-data/select_features.png test-data/select_features.rds test-data/test_sce.rds test-data/test_sce_processed.rds |
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diff -r 2f63b1cd9122 -r 601a933714f1 scmap_get_std_output.xml --- a/scmap_get_std_output.xml Fri Nov 27 13:42:47 2020 +0000 +++ b/scmap_get_std_output.xml Tue Apr 23 07:49:05 2024 +0000 |
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@@ -5,7 +5,12 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scmap_get_std_output.R --predictions-file "${input_predictions_file}" --output-table "${output_predictions_file}" --include-scores "${include_scores}" --tool '${tool}' --sim-col-name "${sim_col_name}" + scmap_get_std_output.R + --predictions-file "${input_predictions_file}" + --output-table "${output_predictions_file}" + --include-scores "${include_scores}" + --tool '${tool}' + --sim-col-name "${sim_col_name}" #if $index --index "${index}" #end if @@ -21,13 +26,19 @@ <param type="text" name="sim_col_name" value="scmap_cluster_siml" label="Column name of similarity scores" help="Name of column that contains distances between clusters/cells" /> </inputs> <outputs> - <data name="output_predictions_file" format="txt" /> + <data name="output_predictions_file" format="tabular" /> </outputs> <tests> <test> <param name="input_predictions_file" value="closest_cells_clusters.tsv" /> <param name="include_scores" value="TRUE" /> - <output name="output_predictions_file" value="scmap_output_tbl.txt" compare="sim_size" /> + <output name="output_predictions_file"> + <assert_contents> + <has_n_lines n="92"/> + <has_text text="predicted_label"/> + <has_text text="Zygote..3.RPKM."/> + </assert_contents> + </output> </test> </tests> <help><![CDATA[ |
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diff -r 2f63b1cd9122 -r 601a933714f1 scmap_macros.xml --- a/scmap_macros.xml Fri Nov 27 13:42:47 2020 +0000 +++ b/scmap_macros.xml Tue Apr 23 07:49:05 2024 +0000 |
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@@ -1,10 +1,10 @@ <macros> - <token name="@TOOL_VERSION@">1.6.3</token> + <token name="@TOOL_VERSION@">1.6.4</token> <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token> <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.11">scmap-cli</requirement> + <requirement type="package" version="0.1.0">scmap-cli</requirement> <yield/> </requirements> </xml> @@ -15,6 +15,7 @@ </xml> <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +1.6.4+galaxy0: Update scmap-cli to 0.1.0 1.6.3+galaxy0: Update scmap-cli to 0.0.11 1.6.2+galaxy0: Update scmap-cli to 0.0.10 1.6.1+galaxy0: Update scmap-cli to 0.0.9. |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/closest_cells.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/closest_cells.csv Tue Apr 23 07:49:05 2024 +0000 |
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@@ -0,0 +1,6 @@ +,Oocyte..1.RPKM.,Oocyte..2.RPKM.,Oocyte..3.RPKM.,Zygote..1.RPKM.,Zygote..2.RPKM.,Zygote..3.RPKM.,X2.cell.embryo.1..Cell.1.RPKM.,X2.cell.embryo.1..Cell.2.RPKM.,X2.cell.embryo.2..Cell.1.RPKM.,X2.cell.embryo.2..Cell.2.RPKM.,X2.cell.embryo.3..Cell.1.RPKM.,X2.cell.embryo.3..Cell.2.RPKM.,X4.cell.embryo.1..Cell.1.RPKM.,X4.cell.embryo.1..Cell.2.RPKM.,X4.cell.embryo.1..Cell.3.RPKM.,X4.cell.embryo.1..Cell.4.RPKM.,X4.cell.embryo.2..Cell.1.RPKM.,X4.cell.embryo.2..Cell.2.RPKM.,X4.cell.embryo.2..Cell.3.RPKM.,X4.cell.embryo.2..Cell.4.RPKM.,X4.cell.embryo.3..Cell.1.RPKM.,X4.cell.embryo.3..Cell.2.RPKM.,X4.cell.embryo.3..Cell.3.RPKM.,X4.cell.embryo.3..Cell.4.RPKM.,X8.cell.embryo.1..Cell.1.RPKM.,X8.cell.embryo.1..Cell.2.RPKM.,X8.cell.embryo.1..Cell.3.RPKM.,X8.cell.embryo.1..Cell.4.RPKM.,X8.cell.embryo.2..Cell.1.RPKM.,X8.cell.embryo.2..Cell.2.RPKM.,X8.cell.embryo.2..Cell.3.RPKM.,X8.cell.embryo.2..Cell.4.RPKM.,X8.cell.embryo.2..Cell.5.RPKM.,X8.cell.embryo.2..Cell.6.RPKM.,X8.cell.embryo.2..Cell.7.RPKM.,X8.cell.embryo.2..Cell.8.RPKM.,X8.cell.embryo.3..Cell.1.RPKM.,X8.cell.embryo.3..Cell.2.RPKM.,X8.cell.embryo.3..Cell.3.RPKM.,X8.cell.embryo.3..Cell.4.RPKM.,X8.cell.embryo.3..Cell.5.RPKM.,X8.cell.embryo.3..Cell.6.RPKM.,X8.cell.embryo.3..Cell.7.RPKM.,X8.cell.embryo.3..Cell.8.RPKM.,Morulae..1..Cell.1.RPKM.,Morulae..1..Cell.2.RPKM.,Morulae..1..Cell.3.RPKM.,Morulae..1..Cell.4.RPKM.,Morulae..1..Cell.5.RPKM.,Morulae..1..Cell.6.RPKM.,Morulae..1..Cell.7.RPKM.,Morulae..1..Cell.8.RPKM.,Morulae..2..Cell.1.RPKM.,Morulae..2..Cell.2.RPKM.,Morulae..2..Cell.3.RPKM.,Morulae..2..Cell.4.RPKM.,Morulae..2..Cell.5.RPKM.,Morulae..2..Cell.6.RPKM.,Morulae..2..Cell.7.RPKM.,Morulae..2..Cell.8.RPKM.,Late.blastocyst..1..Cell.1.RPKM.,Late.blastocyst..1..Cell.2.RPKM.,Late.blastocyst..1..Cell.3.RPKM.,Late.blastocyst..1..Cell.4.RPKM.,Late.blastocyst..1..Cell.5.RPKM.,Late.blastocyst..1..Cell.6.RPKM.,Late.blastocyst..1..Cell.7.RPKM.,Late.blastocyst..1..Cell.8.RPKM.,Late.blastocyst..1..Cell.9.RPKM.,Late.blastocyst..1..Cell.10.RPKM.,Late.blastocyst..1..Cell.11.RPKM.,Late.blastocyst..1..Cell.12.RPKM.,Late.blastocyst..2..Cell.1.RPKM.,Late.blastocyst..2..Cell.2.RPKM.,Late.blastocyst..2..Cell.3.RPKM.,Late.blastocyst..2..Cell.4.RPKM.,Late.blastocyst..2..Cell.5.RPKM.,Late.blastocyst..2..Cell.6.RPKM.,Late.blastocyst..2..Cell.7.RPKM.,Late.blastocyst..2..Cell.8.RPKM.,Late.blastocyst..2..Cell.9.RPKM.,Late.blastocyst..2..Cell.10.RPKM.,Late.blastocyst..3..Cell.1.RPKM.,Late.blastocyst..3..Cell.2.RPKM.,Late.blastocyst..3..Cell.3.RPKM.,Late.blastocyst..3..Cell.4.RPKM.,Late.blastocyst..3..Cell.5.RPKM.,Late.blastocyst..3..Cell.6.RPKM.,Late.blastocyst..3..Cell.7.RPKM.,Late.blastocyst..3..Cell.8.RPKM. +1,1,1,1,6,6,6,10,10,10,10,12,10,23,19,24,22,14,13,24,13,21,24,23,24,28,27,27,25,34,35,36,32,34,34,35,30,37,42,44,38,38,37,39,39,48,49,47,49,46,49,49,27,57,54,55,55,54,51,55,54,62,67,67,63,71,67,62,66,69,69,71,78,65,87,84,78,78,81,82,82,78,81,88,84,90,75,83,78,88,88 +2,2,2,2,11,12,11,7,7,7,7,7,7,13,13,13,14,24,22,14,20,22,23,21,21,27,25,25,27,36,30,30,34,30,33,34,36,38,37,39,39,42,38,43,43,45,46,52,45,51,54,51,26,49,57,56,59,57,59,56,60,70,71,62,67,62,71,69,62,72,62,63,70,76,86,86,81,79,78,76,80,82,82,87,88,89,74,74,88,85,90 +3,3,3,3,12,10,12,8,8,8,8,8,11,14,24,23,21,19,16,19,23,23,18,22,22,26,26,26,26,30,36,34,36,33,36,36,35,40,40,40,41,40,40,38,44,49,54,26,51,54,51,50,28,51,50,59,60,53,58,58,53,61,61,63,64,69,66,64,82,70,70,72,81,71,75,75,76,81,76,78,76,81,78,75,80,88,86,86,90,77,81 +4,6,7,6,4,11,4,9,9,9,9,9,12,24,14,16,16,23,18,23,18,24,13,13,13,40,38,40,38,29,29,29,29,29,29,29,29,42,38,38,37,37,42,37,41,51,50,28,48,50,50,53,47,54,53,54,58,60,56,54,50,71,68,82,65,65,68,67,68,67,65,65,72,73,73,80,82,82,79,79,75,76,79,86,73,85,83,87,89,89,85 +5,5,5,5,5,5,5,12,12,12,12,11,5,22,23,15,24,17,21,17,22,18,22,24,23,25,28,28,28,31,31,31,35,36,35,31,31,41,41,41,40,41,41,41,38,53,51,27,50,49,46,46,52,53,51,58,56,51,55,59,51,65,62,71,72,70,72,66,78,65,72,69,65,70,74,74,79,77,82,77,84,72,76,83,75,72,87,75,85,90,89 |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/closest_cells_clusters.rds |
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Binary file test-data/closest_cells_clusters.rds has changed |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/closest_cells_clusters.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/closest_cells_clusters.tsv Tue Apr 23 07:49:05 2024 +0000 |
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@@ -0,0 +1,91 @@ +cell scmap_cluster_labs scmap_cluster_siml combined_labs +Oocyte..1.RPKM. zygote 0.972457633278923 zygote +Oocyte..2.RPKM. zygote 0.972353568313767 zygote +Oocyte..3.RPKM. zygote 0.973371064673993 zygote +Zygote..1.RPKM. zygote 0.97866272698663 zygote +Zygote..2.RPKM. zygote 0.979717800854604 zygote +Zygote..3.RPKM. zygote 0.97984002400711 zygote +X2.cell.embryo.1..Cell.1.RPKM. 2cell 0.975860542596827 2cell +X2.cell.embryo.1..Cell.2.RPKM. 2cell 0.975977483944058 2cell +X2.cell.embryo.2..Cell.1.RPKM. 2cell 0.97534563242085 2cell +X2.cell.embryo.2..Cell.2.RPKM. 2cell 0.976532855604968 2cell +X2.cell.embryo.3..Cell.1.RPKM. 2cell 0.975715675528499 2cell +X2.cell.embryo.3..Cell.2.RPKM. 2cell 0.976512040050606 2cell +X4.cell.embryo.1..Cell.1.RPKM. 4cell 0.976740874886324 4cell +X4.cell.embryo.1..Cell.2.RPKM. 4cell 0.970679786566831 4cell +X4.cell.embryo.1..Cell.3.RPKM. 4cell 0.971937340916803 4cell +X4.cell.embryo.1..Cell.4.RPKM. 4cell 0.974396302382197 4cell +X4.cell.embryo.2..Cell.1.RPKM. 4cell 0.968256593061058 4cell +X4.cell.embryo.2..Cell.2.RPKM. 4cell 0.976000962530563 4cell +X4.cell.embryo.2..Cell.3.RPKM. 4cell 0.974456795916042 4cell +X4.cell.embryo.2..Cell.4.RPKM. 4cell 0.975046287156331 4cell +X4.cell.embryo.3..Cell.1.RPKM. 4cell 0.980907467386254 4cell +X4.cell.embryo.3..Cell.2.RPKM. 4cell 0.979702774175472 4cell +X4.cell.embryo.3..Cell.3.RPKM. 4cell 0.979541752074044 4cell +X4.cell.embryo.3..Cell.4.RPKM. 4cell 0.979397781619405 4cell +X8.cell.embryo.1..Cell.1.RPKM. 8cell 0.965866705260469 8cell +X8.cell.embryo.1..Cell.2.RPKM. 8cell 0.971874515954174 8cell +X8.cell.embryo.1..Cell.3.RPKM. 8cell 0.970182782492083 8cell +X8.cell.embryo.1..Cell.4.RPKM. 8cell 0.971803309754166 8cell +X8.cell.embryo.2..Cell.1.RPKM. 8cell 0.975660495961879 8cell +X8.cell.embryo.2..Cell.2.RPKM. 8cell 0.978697234565528 8cell +X8.cell.embryo.2..Cell.3.RPKM. 8cell 0.980500043303112 8cell +X8.cell.embryo.2..Cell.4.RPKM. 8cell 0.973337322820485 8cell +X8.cell.embryo.2..Cell.5.RPKM. 8cell 0.97050828475866 8cell +X8.cell.embryo.2..Cell.6.RPKM. 8cell 0.97427362884691 8cell +X8.cell.embryo.2..Cell.7.RPKM. 8cell 0.977362207861906 8cell +X8.cell.embryo.2..Cell.8.RPKM. 8cell 0.978677072589576 8cell +X8.cell.embryo.3..Cell.1.RPKM. 8cell 0.97989418833849 8cell +X8.cell.embryo.3..Cell.2.RPKM. 8cell 0.97485334405104 8cell +X8.cell.embryo.3..Cell.3.RPKM. 8cell 0.975859793936309 8cell +X8.cell.embryo.3..Cell.4.RPKM. 8cell 0.981490977097 8cell +X8.cell.embryo.3..Cell.5.RPKM. 8cell 0.981029618769028 8cell +X8.cell.embryo.3..Cell.6.RPKM. 8cell 0.969682040359692 8cell +X8.cell.embryo.3..Cell.7.RPKM. 8cell 0.978148246228053 8cell +X8.cell.embryo.3..Cell.8.RPKM. 8cell 0.970328380893092 8cell +Morulae..1..Cell.1.RPKM. 16cell 0.959918851368306 16cell +Morulae..1..Cell.2.RPKM. 16cell 0.973499865778146 16cell +Morulae..1..Cell.3.RPKM. 16cell 0.905095452914499 16cell +Morulae..1..Cell.4.RPKM. 16cell 0.975565450656408 16cell +Morulae..1..Cell.5.RPKM. 16cell 0.972676900609201 16cell +Morulae..1..Cell.6.RPKM. 16cell 0.965520701954854 16cell +Morulae..1..Cell.7.RPKM. 16cell 0.974360238512134 16cell +Morulae..1..Cell.8.RPKM. 16cell 0.89292960975856 16cell +Morulae..2..Cell.1.RPKM. 16cell 0.973068555642167 16cell +Morulae..2..Cell.2.RPKM. 16cell 0.972782844321894 16cell +Morulae..2..Cell.3.RPKM. 16cell 0.964788103357924 16cell +Morulae..2..Cell.4.RPKM. 16cell 0.966128218632723 16cell +Morulae..2..Cell.5.RPKM. 16cell 0.959906305241092 16cell +Morulae..2..Cell.6.RPKM. 16cell 0.973292643125946 16cell +Morulae..2..Cell.7.RPKM. 16cell 0.972824053645381 16cell +Morulae..2..Cell.8.RPKM. 16cell 0.966191355651732 16cell +Late.blastocyst..1..Cell.1.RPKM. blast 0.954545456827362 blast +Late.blastocyst..1..Cell.2.RPKM. blast 0.959479973403999 blast +Late.blastocyst..1..Cell.3.RPKM. blast 0.95220936077016 blast +Late.blastocyst..1..Cell.4.RPKM. blast 0.950460474784597 blast +Late.blastocyst..1..Cell.5.RPKM. blast 0.952198095399196 blast +Late.blastocyst..1..Cell.6.RPKM. blast 0.947932383616434 blast +Late.blastocyst..1..Cell.7.RPKM. blast 0.953028259974652 blast +Late.blastocyst..1..Cell.8.RPKM. blast 0.955242273190534 blast +Late.blastocyst..1..Cell.9.RPKM. blast 0.945069684662869 blast +Late.blastocyst..1..Cell.10.RPKM. blast 0.948997282545248 blast +Late.blastocyst..1..Cell.11.RPKM. blast 0.957933181323242 blast +Late.blastocyst..1..Cell.12.RPKM. blast 0.956477894281845 blast +Late.blastocyst..2..Cell.1.RPKM. blast 0.951896178479488 blast +Late.blastocyst..2..Cell.2.RPKM. blast 0.931976810185073 blast +Late.blastocyst..2..Cell.3.RPKM. blast 0.935585386310024 blast +Late.blastocyst..2..Cell.4.RPKM. blast 0.955286040867509 blast +Late.blastocyst..2..Cell.5.RPKM. blast 0.947612540470952 blast +Late.blastocyst..2..Cell.6.RPKM. blast 0.956938141272494 blast +Late.blastocyst..2..Cell.7.RPKM. blast 0.95796374641168 blast +Late.blastocyst..2..Cell.8.RPKM. blast 0.928236097734115 blast +Late.blastocyst..2..Cell.9.RPKM. blast 0.948137126389516 blast +Late.blastocyst..2..Cell.10.RPKM. blast 0.955220996266827 blast +Late.blastocyst..3..Cell.1.RPKM. blast 0.897154517212312 blast +Late.blastocyst..3..Cell.2.RPKM. blast 0.916287566525039 blast +Late.blastocyst..3..Cell.3.RPKM. blast 0.949016031543691 blast +Late.blastocyst..3..Cell.4.RPKM. blast 0.915241215759076 blast +Late.blastocyst..3..Cell.5.RPKM. blast 0.924787897158703 blast +Late.blastocyst..3..Cell.6.RPKM. blast 0.943459425658745 blast +Late.blastocyst..3..Cell.7.RPKM. blast 0.949859434636659 blast +Late.blastocyst..3..Cell.8.RPKM. blast 0.946067646237195 blast |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/closest_cells_similarities.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/closest_cells_similarities.csv Tue Apr 23 07:49:05 2024 +0000 |
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b'@@ -0,0 +1,6 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Binary file test-data/index_cell.rds has changed |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/index_cluster.png |
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Binary file test-data/index_cluster.png has changed |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/index_cluster.rds |
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Binary file test-data/index_cluster.rds has changed |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/project_cluster.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/project_cluster.csv Tue Apr 23 07:49:05 2024 +0000 |
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b |
diff -r 2f63b1cd9122 -r 601a933714f1 test-data/project_cluster.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/project_cluster.tsv Tue Apr 23 07:49:05 2024 +0000 |
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@@ -0,0 +1,91 @@ +cell scmap_cluster_labs scmap_cluster_siml combined_labs +1 Oocyte..1.RPKM. zygote 0.994760865096957 zygote +2 Oocyte..2.RPKM. zygote 0.995125744257364 zygote +3 Oocyte..3.RPKM. zygote 0.995591648577841 zygote +4 Zygote..1.RPKM. 2cell 0.993401179090721 2cell +5 Zygote..2.RPKM. 2cell 0.995369354590786 2cell +6 Zygote..3.RPKM. 2cell 0.98710411159295 2cell +7 X2.cell.embryo.1..Cell.1.RPKM. 2cell 0.998499099285601 2cell +8 X2.cell.embryo.1..Cell.2.RPKM. 2cell 0.998846842740487 2cell +9 X2.cell.embryo.2..Cell.1.RPKM. 2cell 0.998606947244777 2cell +10 X2.cell.embryo.2..Cell.2.RPKM. 2cell 0.998676368789508 2cell +11 X2.cell.embryo.3..Cell.1.RPKM. 2cell 0.997663075228921 2cell +12 X2.cell.embryo.3..Cell.2.RPKM. 2cell 0.99770244480819 2cell +13 X4.cell.embryo.1..Cell.1.RPKM. 4cell 0.990134433448036 4cell +14 X4.cell.embryo.1..Cell.2.RPKM. 4cell 0.983906001584324 4cell +15 X4.cell.embryo.1..Cell.3.RPKM. 4cell 0.983025466176017 4cell +16 X4.cell.embryo.1..Cell.4.RPKM. 4cell 0.986969369421969 4cell +17 X4.cell.embryo.2..Cell.1.RPKM. 4cell 0.978600490705419 4cell +18 X4.cell.embryo.2..Cell.2.RPKM. 4cell 0.990517207278532 4cell +19 X4.cell.embryo.2..Cell.3.RPKM. 4cell 0.986056209223088 4cell +20 X4.cell.embryo.2..Cell.4.RPKM. 4cell 0.988962130990086 4cell +21 X4.cell.embryo.3..Cell.1.RPKM. 4cell 0.995116150658076 4cell +22 X4.cell.embryo.3..Cell.2.RPKM. 4cell 0.99274523738472 4cell +23 X4.cell.embryo.3..Cell.3.RPKM. 4cell 0.995763679518167 4cell +24 X4.cell.embryo.3..Cell.4.RPKM. 4cell 0.995423880082539 4cell +25 X8.cell.embryo.1..Cell.1.RPKM. unassigned 0.589322049052091 unassigned +26 X8.cell.embryo.1..Cell.2.RPKM. 8cell 0.927499839382219 8cell +27 X8.cell.embryo.1..Cell.3.RPKM. 8cell 0.921141336301299 8cell +28 X8.cell.embryo.1..Cell.4.RPKM. unassigned 0.59175824082949 unassigned +29 X8.cell.embryo.2..Cell.1.RPKM. 8cell 0.974849607680171 8cell +30 X8.cell.embryo.2..Cell.2.RPKM. 8cell 0.985093729996275 8cell +31 X8.cell.embryo.2..Cell.3.RPKM. 8cell 0.986839564389094 8cell +32 X8.cell.embryo.2..Cell.4.RPKM. 8cell 0.96892413940019 8cell +33 X8.cell.embryo.2..Cell.5.RPKM. 8cell 0.96431663761681 8cell +34 X8.cell.embryo.2..Cell.6.RPKM. 8cell 0.97148526041646 8cell +35 X8.cell.embryo.2..Cell.7.RPKM. 8cell 0.976238026438341 8cell +36 X8.cell.embryo.2..Cell.8.RPKM. 8cell 0.980695252466275 8cell +37 X8.cell.embryo.3..Cell.1.RPKM. 8cell 0.97966322970515 8cell +38 X8.cell.embryo.3..Cell.2.RPKM. 8cell 0.975362675268717 8cell +39 X8.cell.embryo.3..Cell.3.RPKM. 8cell 0.975167821442514 8cell +40 X8.cell.embryo.3..Cell.4.RPKM. 8cell 0.982088540632061 8cell +41 X8.cell.embryo.3..Cell.5.RPKM. 8cell 0.983236065207029 8cell +42 X8.cell.embryo.3..Cell.6.RPKM. 8cell 0.96962809093506 8cell +43 X8.cell.embryo.3..Cell.7.RPKM. 8cell 0.980186666445985 8cell +44 X8.cell.embryo.3..Cell.8.RPKM. 8cell 0.965226853665217 8cell +45 Morulae..1..Cell.1.RPKM. 16cell 0.950320842050556 16cell +46 Morulae..1..Cell.2.RPKM. 16cell 0.979324688404905 16cell +47 Morulae..1..Cell.3.RPKM. 8cell 0.753074916100457 8cell +48 Morulae..1..Cell.4.RPKM. 16cell 0.975984157933152 16cell +49 Morulae..1..Cell.5.RPKM. 16cell 0.978965252255204 16cell +50 Morulae..1..Cell.6.RPKM. 16cell 0.972542473750977 16cell +51 Morulae..1..Cell.7.RPKM. 16cell 0.980084685003656 16cell +52 Morulae..1..Cell.8.RPKM. 8cell 0.701585854974489 8cell +53 Morulae..2..Cell.1.RPKM. 16cell 0.980419529105244 16cell +54 Morulae..2..Cell.2.RPKM. 16cell 0.980851332000861 16cell +55 Morulae..2..Cell.3.RPKM. 16cell 0.964267219512788 16cell +56 Morulae..2..Cell.4.RPKM. 16cell 0.957787782168123 16cell +57 Morulae..2..Cell.5.RPKM. 16cell 0.965485721368535 16cell +58 Morulae..2..Cell.6.RPKM. 16cell 0.957697139912933 16cell +59 Morulae..2..Cell.7.RPKM. 16cell 0.958777912908415 16cell +60 Morulae..2..Cell.8.RPKM. 16cell 0.973138715636811 16cell +61 Late.blastocyst..1..Cell.1.RPKM. blast 0.946030792526566 blast +62 Late.blastocyst..1..Cell.2.RPKM. blast 0.962138004343889 blast +63 Late.blastocyst..1..Cell.3.RPKM. blast 0.950748704451565 blast +64 Late.blastocyst..1..Cell.4.RPKM. blast 0.957227580718105 blast +65 Late.blastocyst..1..Cell.5.RPKM. blast 0.95434894493587 blast +66 Late.blastocyst..1..Cell.6.RPKM. blast 0.955943421895937 blast +67 Late.blastocyst..1..Cell.7.RPKM. blast 0.956356985705706 blast +68 Late.blastocyst..1..Cell.8.RPKM. blast 0.970493175210153 blast +69 Late.blastocyst..1..Cell.9.RPKM. blast 0.945326349715578 blast +70 Late.blastocyst..1..Cell.10.RPKM. blast 0.956481724858848 blast +71 Late.blastocyst..1..Cell.11.RPKM. blast 0.956159281369748 blast +72 Late.blastocyst..1..Cell.12.RPKM. blast 0.96425809974187 blast +73 Late.blastocyst..2..Cell.1.RPKM. blast 0.954566650006314 blast +74 Late.blastocyst..2..Cell.2.RPKM. blast 0.859795704593317 blast +75 Late.blastocyst..2..Cell.3.RPKM. blast 0.881194674798541 blast +76 Late.blastocyst..2..Cell.4.RPKM. blast 0.96703530306384 blast +77 Late.blastocyst..2..Cell.5.RPKM. blast 0.958079246177835 blast +78 Late.blastocyst..2..Cell.6.RPKM. blast 0.959780240457135 blast +79 Late.blastocyst..2..Cell.7.RPKM. blast 0.957562095748124 blast +80 Late.blastocyst..2..Cell.8.RPKM. blast 0.908172032074667 blast +81 Late.blastocyst..2..Cell.9.RPKM. blast 0.958716824617989 blast +82 Late.blastocyst..2..Cell.10.RPKM. blast 0.966000611704395 blast +83 Late.blastocyst..3..Cell.1.RPKM. blast 0.830150497819373 blast +84 Late.blastocyst..3..Cell.2.RPKM. blast 0.894937328405391 blast +85 Late.blastocyst..3..Cell.3.RPKM. blast 0.948131108497039 blast +86 Late.blastocyst..3..Cell.4.RPKM. blast 0.832148158277939 blast +87 Late.blastocyst..3..Cell.5.RPKM. blast 0.840068518192648 blast +88 Late.blastocyst..3..Cell.6.RPKM. blast 0.923562228265187 blast +89 Late.blastocyst..3..Cell.7.RPKM. blast 0.9377231069535 blast +90 Late.blastocyst..3..Cell.8.RPKM. blast 0.917408664281774 blast |
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diff -r 2f63b1cd9122 -r 601a933714f1 test-data/test_sce_processed.rds |
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