| Previous changeset 7:4048d82f0c88 (2020-08-17) Next changeset 9:cf13a1e03e5b (2021-03-15) |
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Commit message:
"planemo upload commit 92185cd605fe0cfa78593ea10b0222e8aeb6ef98" |
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modified:
busco.xml macros.xml test-data/genome_results/full_table test-data/genome_results/missing_buscos_list test-data/genome_results/short_summary test-data/proteome_results/full_table test-data/proteome_results/missing_buscos_list test-data/proteome_results/short_summary test-data/transcriptome_results/full_table test-data/transcriptome_results/missing_buscos_list test-data/transcriptome_results/short_summary |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 busco.xml --- a/busco.xml Mon Aug 17 06:50:18 2020 -0400 +++ b/busco.xml Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -82,7 +82,11 @@ <param name="mode" value="geno"/> <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4"/> <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4"/> - <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4"/> + <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4"> + <assert_contents> + <has_text text="# BUSCO version is: @TOOL_VERSION@" /> + </assert_contents> + </output> </test> <test> <param name="input" value="proteome.fa"/> |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 macros.xml --- a/macros.xml Mon Aug 17 06:50:18 2020 -0400 +++ b/macros.xml Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">4.1.2</token> + <token name="@TOOL_VERSION@">4.1.4</token> <xml name="citations"> <citations> |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/genome_results/full_table --- a/test-data/genome_results/full_table Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/genome_results/full_table Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id Status Sequence Gene Start Gene End Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/genome_results/missing_buscos_list --- a/test-data/genome_results/missing_buscos_list Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/genome_results/missing_buscos_list Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/genome_results/short_summary --- a/test-data/genome_results/short_summary Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/genome_results/short_summary Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/4/1/7/dataset_417da650-712e-4081-86f4-3edaae2d6232.dat +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/d/c/0/dataset_dc06dd53-8ed0-477c-b8bd-dd9fe68fd7e0.dat # BUSCO was run in mode: genome ***** Results: ***** |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/proteome_results/full_table --- a/test-data/proteome_results/full_table Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/proteome_results/full_table Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id Status Sequence Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/proteome_results/missing_buscos_list --- a/test-data/proteome_results/missing_buscos_list Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/proteome_results/missing_buscos_list Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/proteome_results/short_summary --- a/test-data/proteome_results/short_summary Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/proteome_results/short_summary Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/5/e/9/dataset_5e95c1d5-37e1-4fca-8e9b-3058fa860695.dat +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/0/9/0/dataset_090e32f3-7f4a-47b2-b1c3-c80bb88da90f.dat # BUSCO was run in mode: proteins ***** Results: ***** |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/transcriptome_results/full_table --- a/test-data/transcriptome_results/full_table Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/transcriptome_results/full_table Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id Status Sequence Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/transcriptome_results/missing_buscos_list --- a/test-data/transcriptome_results/missing_buscos_list Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/transcriptome_results/missing_buscos_list Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r 4048d82f0c88 -r 602fb8e63aa7 test-data/transcriptome_results/short_summary --- a/test-data/transcriptome_results/short_summary Mon Aug 17 06:50:18 2020 -0400 +++ b/test-data/transcriptome_results/short_summary Wed Dec 30 14:07:37 2020 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 4.1.2 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/9/9/2/dataset_9922e6bd-50c2-4b64-8e36-70b9b9c3f8ed.dat +# BUSCO version is: 4.1.4 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmp0yshlkbl/files/c/d/5/dataset_cd590461-e7d2-4927-8b96-f3282e2da236.dat # BUSCO was run in mode: transcriptome ***** Results: ***** |