| Previous changeset 2:5970f6f2a36b (2017-02-22) Next changeset 4:51261dff08a5 (2017-03-13) |
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Commit message:
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/LocARNAGraphClust commit 5a545fc913b3a07e1452e67f66b2ca593660abdf |
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modified:
locarna_best_subtree.xml |
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| diff -r 5970f6f2a36b -r 606440a3852d locarna_best_subtree.xml --- a/locarna_best_subtree.xml Wed Feb 22 16:51:35 2017 -0500 +++ b/locarna_best_subtree.xml Mon Feb 27 12:02:38 2017 -0500 |
| [ |
| @@ -1,6 +1,6 @@ -<tool id="locarna_best_subtree" name="locarna_best_subtree" version="0.1.0" > +<tool id="locarna_best_subtree" name="locarna_graphclust" version="0.1.0" > <requirements> - <requirement type="package" version="0.1.8">graphclust-wrappers</requirement> + <requirement type="package" version="0.1.9">graphclust-wrappers</requirement> <requirement type="package" version='1.8.10'>locarna</requirement> <requirement type="package" version='2.1'>rnaz</requirement> <requirement type="package" version='0.07'>perl-math-round</requirement> @@ -11,7 +11,7 @@ <command> <![CDATA[ - 'locARNAGraphClust.pl' '$center_fa_file' '$tree_file' '$tree_matrix' '$data_map' + 'locARNAGraphClust.pl' '$center_fa_file' '$tree_file' '$tree_matrix' '$data_map' $allow_overlap #if str($param_type.param_type_selector) == "gclust" $param_type.p $param_type.max_diff_am @@ -32,7 +32,7 @@ <param type="data" name="tree_file" label="trees" format="text" help="text format" /> <param type="data" name="tree_matrix" label="tree_matrix" format="text" help="text format" /> <param type="data" name="data_map" label="data_map" format="txt" help="text format" /> - + <param name="allow_overlap" type="boolean" truevalue="1" falsevalue="0" label="Allow overlap in subtrees" help="otherwise ignore subtree if it contains overlapping sequences"/> <conditional name="param_type"> <param name="param_type_selector" type="select" label="Choose the type of parameters"> @@ -77,7 +77,6 @@ </inputs> <outputs> - <data name="model_tree_stk" format="stockholm" label="model.tree.stk" from_work_dir="MODEL/best_subtree.aln" /> </outputs> <tests> @@ -86,6 +85,7 @@ <param name="center_fa_file" value="1.1.center.fa"/> <param name="data_map" value="data.map"/> <param name="tree_matrix" value="1.1.matrix.tree"/> + <param name="allow_overlap" value="0"/> <conditional name="param_type"> <param name="iteration_num_selector" value="gclust"/> <param name="p" value="0.001"/> |