| Previous changeset 0:c852ad97ba28 (2021-03-16) Next changeset 2:77d8e0fd162a (2023-10-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02 |
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modified:
hicDifferentialTAD.xml macros.xml |
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| diff -r c852ad97ba28 -r 608538d083a2 hicDifferentialTAD.xml --- a/hicDifferentialTAD.xml Tue Mar 16 21:17:26 2021 +0000 +++ b/hicDifferentialTAD.xml Thu Jan 12 17:40:56 2023 +0000 |
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| @@ -61,7 +61,8 @@ <param name="mode_selector" value="all" /> <param name="modeReject" value="one" /> <output name="acceptedTADs" file="hicDifferentialTAD/accepted.txt" ftype="txt" /> - <output name="rejectedTADs" file="hicDifferentialTAD/rejected.txt" ftype="txt" /> + <!-- TODO remove lines_diff when updating to >=3.7 where" a multicore issue was solved that led to skipping data at the start and end of chromosomes--> + <output name="rejectedTADs" file="hicDifferentialTAD/rejected.txt" ftype="txt" lines_diff="4"/> </test> </tests> <help><![CDATA[ |
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| diff -r c852ad97ba28 -r 608538d083a2 macros.xml --- a/macros.xml Tue Mar 16 21:17:26 2021 +0000 +++ b/macros.xml Thu Jan 12 17:40:56 2023 +0000 |
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| @@ -1,7 +1,7 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> <token name="@TOOL_VERSION@">3.6</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $use_range.range_min:$use_range.range_max @@ -333,7 +333,7 @@ <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" /> </xml> <xml name="xMax"> - <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> + <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> </xml> <xml name="filterThreshold"> <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." /> |