| Previous changeset 5:10c98fab6c5a (2018-11-30) Next changeset 7:40985510cd98 (2021-04-06) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit f84c314bc721b5b0c7be10eaf287b1830caca241" |
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modified:
kallisto_quant.xml macros.xml test-data/kallisto_pseudo_out1.tab test-data/kallisto_pseudo_out6.tab |
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| diff -r 10c98fab6c5a -r 60f888039fb2 kallisto_quant.xml --- a/kallisto_quant.xml Fri Nov 30 06:26:27 2018 -0500 +++ b/kallisto_quant.xml Thu Sep 26 09:12:20 2019 -0400 |
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| @@ -40,7 +40,7 @@ $reads #end if #if $pseudobam: - | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -o '$pseudobam_output' - + | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -T "\${TMPDIR:-.}" -o '$pseudobam_output' - #end if && cat run_info.json ]]> |
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| diff -r 10c98fab6c5a -r 60f888039fb2 macros.xml --- a/macros.xml Fri Nov 30 06:26:27 2018 -0500 +++ b/macros.xml Thu Sep 26 09:12:20 2019 -0400 |
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| @@ -1,10 +1,10 @@ <?xml version="1.0"?> <macros> - <token name="@VERSION@">0.43.1</token> + <token name="@VERSION@">0.46.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">kallisto</requirement> - <requirement type="package" version="1.5">samtools</requirement> + <requirement type="package" version="1.9">samtools</requirement> </requirements> </xml> <xml name="citations"> |
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| diff -r 10c98fab6c5a -r 60f888039fb2 test-data/kallisto_pseudo_out1.tab --- a/test-data/kallisto_pseudo_out1.tab Fri Nov 30 06:26:27 2018 -0500 +++ b/test-data/kallisto_pseudo_out1.tab Thu Sep 26 09:12:20 2019 -0400 |
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| @@ -1,2 +1,4 @@ -0 0 100 -0 1 100 +%%MatrixMarket matrix coordinate real general +2 1 2 +1 1 100 +2 1 100 |
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| diff -r 10c98fab6c5a -r 60f888039fb2 test-data/kallisto_pseudo_out6.tab --- a/test-data/kallisto_pseudo_out6.tab Fri Nov 30 06:26:27 2018 -0500 +++ b/test-data/kallisto_pseudo_out6.tab Thu Sep 26 09:12:20 2019 -0400 |
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| @@ -1,2 +1,4 @@ -0 0 18 -0 1 18 +%%MatrixMarket matrix coordinate real general +2 1 2 +1 1 18 +2 1 18 |