| Previous changeset 2:304adcfe3660 (2018-01-31) Next changeset 4:3c9d01ebc56d (2018-09-21) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit 7e91a34b0ebd7bc284823c71f32691170183e388 |
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modified:
sRbowtie.xml |
| b |
| diff -r 304adcfe3660 -r 61ab0d4bd187 sRbowtie.xml --- a/sRbowtie.xml Wed Jan 31 17:55:20 2018 -0500 +++ b/sRbowtie.xml Thu Feb 01 13:07:22 2018 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.0.2"> +<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.0.3"> <description>for small RNA short reads</description> <requirements> <requirement type="package" version="1.1.2=py27_0">bowtie</requirement> @@ -12,9 +12,9 @@ #else: #set index_path = $refGenomeSource.index.fields.path #end if - #if $input.extension == "fasta": + #if $input.is_of_type('fasta'): #set format = "-f" - #elif $input.extension == "fastq" or $input.extension == "fastqsanger": + #elif $input.is_of_type('fastq'): #set format = "-q" #end if |