Repository 'qiime2__feature_table__tabulate_seqs'
hg clone https://toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__feature_table__tabulate_seqs

Changeset 0:61ef9506af71 (2022-08-29)
Next changeset 1:38b618d1eb4d (2023-01-13)
Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
added:
qiime2__feature_table__tabulate_seqs.xml
test-data/merge.test0.feature-table1.qza
test-data/merge.test0.feature-table2.qza
test-data/merge.test1.feature-table1.qza
test-data/merge.test1.feature-table2.qza
test-data/merge.test1.feature-table3.qza
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diff -r 000000000000 -r 61ef9506af71 qiime2__feature_table__tabulate_seqs.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__feature_table__tabulate_seqs.xml Mon Aug 29 19:58:46 2022 +0000
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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 feature-table tabulate-seqs" id="qiime2__feature_table__tabulate_seqs" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+    <description>View sequence associated with each feature</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <version_command>q2galaxy version feature_table</version_command>
+    <command detect_errors="aggressive">q2galaxy run feature_table tabulate_seqs '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <param name="data" type="data" format="qza" label="data: FeatureData[Sequence | AlignedSequence]" help="[required]  The feature sequences to be tabulated.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureData[Sequence]"/>
+                <filter type="add_value" value="FeatureData[AlignedSequence]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: feature-table tabulate-seqs
+====================================
+View sequence associated with each feature
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Generate tabular view of feature identifier to sequence mapping, including links to BLAST each sequence against the NCBI nt database.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1093/nar/gkw1071</citation>
+        <citation type="doi">10.1093/nar/gkn201</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
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